External firewire drive fails to boot OS X after restart

I have a G4 Cube that exhibits a perplexing boot issue on an external firewire drive. The external drive is a clone of the Cube's internal dual boot, two partition drive made with an identical 120 GB Seagate. The internal drive boots without incident into either OS X or OS 9 - each in it's own partition.
The problem comes when I select the external drive's OS X partition in Startup Disk and restart - the external drive's activity LED shows an initial attempt to boot but then hesitates and boots to the internal OS X partition repeatedly.
As a workaround, I am able to select and boot to the OS 9 partition, either internally or externally, launch the StartUp Disk control panel, select the external OS X partition and reboot successfully into that partition. But upon a restart, it fails to boot into the external OS X partition repeating the aforementioned behavior i.e. it boots to the internal OS X partition.
Using Option-Restart shows the the two partitions on the external drive and the two partitions on the internal drive normally but will only successfully process selecting either of the two OS 9 partitions or the internal OS X partition, again failing to process a selection to the external OS X partition.
Interestingly, this same external firewire drive will repeatedly boot to it's OS X partition without incident using either of two iBook G4s.
I'm stumped!

Hi, LEOinDC -
How old is the internal battery in that Cube? Many machines exhibit boot anomalies if that battery is too weak or dead.
Those batteries have an expected life of about 4 to 5 years under best-case usage; if the machine is unplugged regularly or for an extended period, the battery is consumed much faster. Even if the machine is not unnplugged the battery will eventually die, and there will be no symptoms such as loss of date or time since the trickle power drawn when the machine is shut down (but still plugged in) will maintain those.
Also, is the external firewire drive self-powered? If not, try that.
Sometimes when using Startup Manager (which is what booting with Option held down invokes), all available bootable volumes aren't picked up before it displays what it has found. The solution for that is to click the circular arrow button in Startup Manager - this is an instruction to rescan the buses.

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