External Hard drives spooling after display power down

When I shut off my MBP thats connected to a 27" thunderbolt display, the external hard drives that I've got connected to the display shut down, then spool back up after everything has been shut down.  How can I get them to stay off?
Current set up: MBP-Thunderbolt display-USB hub-2 external drives
Thank you!

I decided to try KeepDriveSpinning for my issue and I found that 30 sec was the optimal time to stop my drive spinning up/down. I tried 35 sec and up to 60 and the issue kept occuring. You could try a different time setting if you haven't already.
It does sound like Mountain Lion is the issue in your case.
Sorry, I don't really have the technical skills to help you. I'm really just fumbling around.
On a related point I think my external drive is also the cause of my mac not automatically sleeping. I came across acommand that lists the things that are preventing the mac form sleeping. Maybe, [thats a big maybe], the command might help you with your issue
pmset -g assertions
and there is a related command that continually logs the things that prevent sleep
pmset -g assertionslog
If you ran the logging one and then slept the screen and tired accessing your drives it might log something that may help??? Its a long shot though.
http://hints.macworld.com/article.php?story=20120701234338952

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