External (thunderbolt) display not working at all when in clamshell mode

I have a brand new macbook pro (2014). With a thunderbolt display and external keyboard/mouse attached, I use the computer as a 'desktop' all the time (lid closed). Always worked fine, until I upgraded to Yosemite. Now, either the machine doesn't boot at all, OR (even more strangely), it takes many minutes to boot up, and the animation of fades and also the mouse cursor jump around extremely slowly--the interface is completely unusable and I have to open the display and manually force a shutdown by holding the power button down. Without an external monitor attached, everything seems to work just fine.
Has anyone else experienced this, and has anyone found a work around?
Thank you,
Frustrated with Apple's apparent software quality decline,
Mark

Ran Etrecheck and my results are:
Problem description:
Thunderbolt Display doesn’t come on after power up. Also my desktop picture gets changed after display is restored.
EtreCheck version: 2.1.5 (108)
Report generated December 31, 2014 at 10:08:41 AM CST
Click the [Support] links for help with non-Apple products.
Click the [Details] links for more information about that line.
Click the [Adware] links for help removing adware.
Hardware Information: ℹ️
MacBook Pro (Retina, 15-inch, Early 2013) (Verified)
MacBook Pro - model: MacBookPro10,1
1 2.7 GHz Intel Core i7 CPU: 4-core
16 GB RAM Not upgradeable
BANK 0/DIMM0
8 GB DDR3 1600 MHz ok
BANK 1/DIMM0
8 GB DDR3 1600 MHz ok
Bluetooth: Good - Handoff/Airdrop2 supported
Wireless: en0: 802.11 a/b/g/n
Video Information: ℹ️
Intel HD Graphics 4000
NVIDIA GeForce GT 650M - VRAM: 1024 MB
Thunderbolt Display 2560 x 1440
System Software: ℹ️
OS X 10.10.1 (14B25) - Uptime: 0:6:14
Disk Information: ℹ️
APPLE SSD SD512E disk0 : (500.28 GB)
EFI (disk0s1) <not mounted> : 210 MB
Recovery HD (disk0s3) <not mounted> [Recovery]: 650 MB
Macintosh HD (disk2) / : 499.07 GB (357.63 GB free)
Encrypted AES-XTS Unlocked
Core Storage: disk0s2 499.42 GB Online
ST1000LM024 HN-M101MBB disk1 : (1 TB)
THERESA EXT (disk1s1) /Volumes/THERESA EXT : 190.04 GB (189.34 GB free)
1TB External (disk1s2) /Volumes/1TB External : 810.17 GB (120.69 GB free)
USB Information: ℹ️
Apple Inc. FaceTime HD Camera (Built-in)
Apple Inc. Apple Internal Keyboard / Trackpad
Apple Inc. BRCM20702 Hub
Apple Inc. Bluetooth USB Host Controller
Apple Inc. MacBook Air SuperDrive
C-Media Electronics Inc. BassJump Core
Apple Inc. Apple Thunderbolt Display
Apple Inc. FaceTime HD Camera (Display)
Apple Inc. Display Audio
Firewire Information: ℹ️
LaCie Rugged FW/USB 800mbit - 800mbit max
disk3s1 (disk3s1) <not mounted> : 32 KB
320GB External (disk3s3) /Volumes/320GB External : 499.97 GB (88.33 GB free)
Thunderbolt Information: ℹ️
Apple Inc. thunderbolt_bus
Apple Inc. Thunderbolt Display
G-Technology G-RAID with Thunderbolt
LaCie Rugged mini
Gatekeeper: ℹ️
Mac App Store and identified developers
Kernel Extensions: ℹ️
/System/Library/Extensions
[loaded] com.Leawo.driver.AudioDevice (1.0.0d1 - SDK 10.2) [Support]
[not loaded] com.palm.ClassicNotSeizeDriver (3.2.1) [Support]
[not loaded] com.sierrawireless.driver.SierraDevSupport (2.0.4) [Support]
[not loaded] com.sierrawireless.driver.SierraFSCSupport (2.0.4) [Support]
[not loaded] com.sierrawireless.driver.SierraODSupport (2.0.5) [Support]
[loaded] com.sierrawireless.driver.SierraSerial (1.0.1) [Support]
[not loaded] com.sierrawireless.driver.SierraSupport (1.4.5) [Support]
[not loaded] com.sierrawireless.driver.SierraSupportKicker (1.4.5) [Support]
[not loaded] com.sierrawireless.driver.SierraSwitch (1.2.0) [Support]
[not loaded] com.twelvesouth.driver.BassJumpOverrideDriver (2.5.1 - SDK 10.9) [Support]
Launch Agents: ℹ️
[running] com.flipvideo.FlipShare.AutoRun.plist [Support]
[loaded] com.oracle.java.Java-Updater.plist [Support]
[running] com.twelvesouth.bassjump.observer.plist [Support]
Launch Daemons: ℹ️
[loaded] com.adobe.fpsaud.plist [Support]
[not loaded] com.gopro.stereomodestatus.plist [Support]
[loaded] com.macpaw.CleanMyMac2.Agent.plist [Support]
[loaded] com.microsoft.office.licensing.helper.plist [Support]
[loaded] com.oracle.java.Helper-Tool.plist [Support]
[loaded] com.oracle.java.JavaUpdateHelper.plist [Support]
[not loaded] com.sierrawireless.SierraReset.plist [Support]
[running] com.sierrawireless.SierraSerial.plist [Support]
[running] com.sierrawireless.SWoCMon.plist [Support]
[running] com.twelvesouth.bassjump.player.plist [Support]
User Launch Agents: ℹ️
[loaded] com.adobe.ARM.[...].plist [Support]
[loaded] com.google.keystone.agent.plist [Support]
[not loaded] com.macpaw.CleanMyMac.helperTool.plist [Support]
[not loaded] com.macpaw.CleanMyMac.trashSizeWatcher.plist [Support]
[loaded] com.macpaw.CleanMyMac2Helper.diskSpaceWatcher.plist [Support]
[loaded] com.macpaw.CleanMyMac2Helper.scheduledScan.plist [Support]
[loaded] com.macpaw.CleanMyMac2Helper.trashWatcher.plist [Support]
User Login Items: ℹ️
GrowlHelperApp Application (/Library/PreferencePanes/Growl.prefPane/Contents/Resources/GrowlHelperApp.app)
Suitcase Fusion Application (/Applications/Extensis Suitcase Fusion/Suitcase Fusion.app)
AdobeResourceSynchronizer ApplicationHidden (/Applications/Adobe Acrobat 8 Professional/Adobe Acrobat Professional.app/Contents/Support/AdobeResourceSynchronizer.app)
Dropbox Application (/Applications/Dropbox.app)
Google Drive Application (/Applications/Google Drive.app)
AirPlayitServerManager Application (/Applications/AirPlayit.app/Contents/Resources/AirPlayitServerManager.app)
Internet Plug-ins: ℹ️
Google Earth Web Plug-in: Version: 6.0 [Support]
Default Browser: Version: 600 - SDK 10.10
Flip4Mac WMV Plugin: Version: 3.2.0.16   - SDK 10.8 [Support]
RealPlayer Plugin: Version: Unknown [Support]
Silverlight: Version: 5.1.30514.0 - SDK 10.6 [Support]
FlashPlayer-10.6: Version: 16.0.0.235 - SDK 10.6 [Support]
WidevineMediaOptimizer: Version: 6.0.0.12757 - SDK 10.7 [Support]
Flash Player: Version: 16.0.0.235 - SDK 10.6 [Support]
QuickTime Plugin: Version: 7.7.3
iPhotoPhotocast: Version: 7.0
SharePointBrowserPlugin: Version: 14.4.7 - SDK 10.6 [Support]
AdobePDFViewer: Version: 10.1.0 [Support]
JavaAppletPlugin: Version: Java 7 Update 71 Check version
User internet Plug-ins: ℹ️
BrowserPlus_2.9.8: Version: 2.9.8 [Support]
fbplugin_1_0_3: Version: Unknown [Support]
Safari Extensions: ℹ️
Facebook Cleaner [Installed]
F.B. Purity - Cleans Up Facebook [Installed]
AVG Do Not Track [Installed]
3rd Party Preference Panes: ℹ️
3ivx MPEG-4 [Support]
BrowserPlus [Support]
Flash Player [Support]
Flip4Mac WMV [Support]
GoPro [Support]
Growl [Support]
Java [Support]
Tuxera NTFS [Support]
Time Machine: ℹ️
Skip System Files: NO
Mobile backups: OFF
Auto backup: YES
Volumes being backed up:
Macintosh HD: Disk size: 499.07 GB Disk used: 141.44 GB
Destinations:
Data [Network]
Total size: 3.00 TB
Total number of backups: 30
Oldest backup: 2014-07-08 04:52:19 +0000
Last backup: 2014-12-31 02:32:04 +0000
Size of backup disk: Excellent
Backup size 3.00 TB > (Disk size 499.07 GB X 3)
Top Processes by CPU: ℹ️
      4% WindowServer
      0% fontd
      0% SystemUIServer
      0% AppleSpell
      0% Google Drive
Top Processes by Memory: ℹ️
309 MB mds_stores
241 MB Dock
206 MB com.apple.WebKit.WebContent
103 MB Safari
103 MB Google Drive
Virtual Memory Information: ℹ️
12.03 GB Free RAM
2.51 GB Active RAM
1.42 GB Inactive RAM
1.22 GB Wired RAM
2.03 GB Page-ins
0 B Page-outs
Diagnostics Information: ℹ️
Dec 31, 2014, 10:03:01 AM Self test - passed
Dec 30, 2014, 05:26:28 PM /Users/[redacted]/Library/Logs/DiagnosticReports/garcon_2014-12-30-172628_[reda cted].crash
If there's anyone out there that can help please...
I am running the latest firmware on the TBD and all software is up to date as you can see.

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External (thunderbolt) display not working at all when in clamshell mode

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