Failure to repair disk permissions

Hello fellow Mac users;
I really hope that someone here can help me with my issue.
I was doing some "spring cleaning" and deleted a whole bunch of unneeded files from my Mac, however I did not touch any system files!
When I restarted the Mac after all that it just showed the "thinking screen" the very first one with the Apple Symbol and it just "thought" for about 3 hours without bringing up the log in screen.
So I used my MAC OS X Installation Disk to get to the Disk Utility. I verified the disk and it said that the volume seemed to be okay. However when I tried to repair the disk permissions, I had a drop down window that said "permissions repair failure upon exit" and then in the main window it said the repair disk permissions was complete.
I'm scared now to try another restart and maybe crash my Mac totally! Help!!!
Thank you for any input!
Schnuckl

Hi,
Welcome to Apple Discussions.
I recommend saving all personal files including Address Book contacts, Mail accounts etc to an external disk or DVD immediately, at least for peace of mind should your system go down. Your cleaning exercise has likely caused an issue with installed receipts. Have a look in the folder Macintosh HD/Library/Receipts - all *.pkg installations (ie not those you drag-and-drop to install) store a receipt which tell OSX which permissions are required for the application. Disk Utility looks here when repairing permissions. If the names of your programs in /Library/Receipts are still present it's likely cleaning has corrupted the folders boms and db inside this directory. There is really only one option I personally would feel comfortable with, to perform a clean install (not archive and install) of OSX once I had saved my personal data. Don't bother backing up applications, those should all be clean installed as well on a fresh copy of OSX - if you need to remind yourself which 3rd party applications to reinstall afterwards, make a note beforehand including their serial numbers if licensed. If you own a paid-up .Mac account, goto System Preferences/.Mac/sync and select which essentials to back-up to your iDisk for convenient access following the reinstall.
I strongly advise against restarting your machine until you have saved everything you want to keep, should the worst happen.

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    1/29/11 6:37:03 AM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
    1/29/11 6:37:13 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
    1/29/11 6:37:42 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/29/11 6:37:42 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/29/11 6:37:50 AM com.apple.WindowServer[54] Sat Jan 29 06:37:50 Troy-Lindstroms-MacBook.local WindowServer[54] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/29/11 6:37:52 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
    1/29/11 6:38:03 AM [0x0-0x8008].com.skype.skype[113] Main starting with pid 113 parent pid 89
    1/29/11 6:38:05 AM Skype[113] SkypeApplication::init called
    1/29/11 12:14:57 PM [0x0-0x36036].com.apple.CharacterPaletteIM[330] objc[330]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
    1/29/11 12:43:40 PM [0x0-0x39039].com.apple.CharacterPaletteIM[346] objc[346]: Class ThinDividerSplitView is implemented in both /System/Library/Input Methods/CharacterPalette.app/Contents/MacOS/CharacterPalette and /System/Library/Input Methods/CharacterPalette.app/Contents/PlugIns/RomanView.CharPalettePlugin/Conte nts/MacOS/RomanView. One of the two will be used. Which one is undefined.
    1/29/11 6:52:46 PM com.apple.launchd.peruser.501[89] ([0x0-0xf00f].com.apple.Safari[131]) Exited: Terminated
    1/29/11 6:52:59 PM com.apple.launchd.peruser.501[89] ([0x0-0x1e01e].com.apple.AddressBook[206]) Exited: Terminated
    1/29/11 6:52:59 PM loginwindow[29] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
    1/29/11 6:52:59 PM com.apple.loginwindow[29] 2011-01-29 18:52:59.446 loginwindow[29:107] * -[NSCFArray objectAtIndex:]: index (1) beyond bounds (1)
    1/29/11 6:53:14 PM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
    1/30/11 9:17:52 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/30/11 9:19:51 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 9:19:51 AM com.apple.WindowServer[68] Sun Jan 30 09:19:51 Troy-Lindstroms-MacBook.local WindowServer[68] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/30/11 9:19:54 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] ALF error: cannot find useragent 1102
    1/30/11 9:20:00 AM com.apple.UserEventAgent-LoginWindow[78] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/30/11 9:20:00 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/30/11 9:20:02 AM fontd[98] Database content version mismatch (stored(15) != expected(14))
    1/30/11 9:20:04 AM SoftwareUpdateCheck[94] Checking for updates
    1/30/11 9:20:05 AM storeagent[102] port created
    1/30/11 9:20:08 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
    1/30/11 9:20:38 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
    1/30/11 9:20:39 AM com.apple.loginwindow[22] shutdown: / is busy updating; waiting for lock
    1/30/11 9:20:44 AM com.apple.launchd[1] (com.apple.suhelperd[101]) Exited with exit code: 2
    1/30/11 9:20:45 AM com.apple.launchd.peruser.501[86] ([0x0-0x6006].SoftwareUpdateCheck[94]) Exited with exit code: 102
    1/30/11 9:20:49 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
    1/30/11 9:20:55 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
    1/30/11 9:21:16 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
    1/30/11 9:22:04 AM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/30/11 9:22:04 AM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/30/11 9:22:07 AM fontd[101] Database content version mismatch (stored(15) != expected(14))
    1/30/11 9:22:07 AM fontd[101] Failed to open read-only database, regenerating DB
    1/30/11 9:22:11 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 9:22:13 AM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
    1/30/11 9:22:19 AM com.apple.WindowServer[69] Sun Jan 30 09:22:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/30/11 9:22:26 AM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 9:22:26 AM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
    1/30/11 9:22:28 AM Skype[116] SkypeApplication::init called
    1/30/11 10:33:53 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
    1/30/11 10:34:02 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/30/11 10:34:26 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
    1/30/11 10:34:26 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/30/11 10:34:28 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[107]) Exited with exit code: 1
    1/30/11 10:34:32 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
    1/30/11 10:34:36 AM Skype[112] SkypeApplication::init called
    1/30/11 3:37:45 PM com.apple.launchd[1] * launchd[1] has started up. *
    1/30/11 3:50:19 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 3:50:19 PM com.apple.WindowServer[69] Sun Jan 30 15:50:19 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/30/11 3:50:21 PM com.apple.fontd[68] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 3:50:52 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
    1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] ALF error: cannot find useragent 1102
    1/30/11 3:53:14 PM com.apple.UserEventAgent-LoginWindow[80] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/30/11 3:53:14 PM com.apple.launchd.peruser.501[90] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/30/11 3:53:15 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
    1/30/11 3:53:18 PM com.apple.coreservicesd[45] ThrottleProcessIO: throttling disk i/o
    1/30/11 3:53:20 PM com.apple.launchd.peruser.501[90] (com.apple.Kerberos.renew.plist[109]) Exited with exit code: 1
    1/30/11 4:00:53 PM com.apple.launchd.peruser.501[90] (com.apple.AirPortBaseStationAgent[111]) Exited: Killed
    1/30/11 4:12:07 PM com.apple.launchd[1] * launchd[1] has started up. *
    1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] ALF error: cannot find useragent 1102
    1/30/11 4:12:56 PM com.apple.UserEventAgent-LoginWindow[81] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/30/11 4:12:56 PM com.apple.launchd.peruser.501[89] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/30/11 4:12:59 PM fontd[101] Database content version mismatch (stored(15) != expected(14))
    1/30/11 4:12:59 PM fontd[101] Failed to open read-only database, regenerating DB
    1/30/11 4:13:06 PM com.apple.launchd.peruser.501[89] (com.apple.Kerberos.renew.plist[111]) Exited with exit code: 1
    1/30/11 4:13:15 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 4:13:21 PM com.apple.fontd[101] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/30/11 4:13:21 PM [0x0-0x9009].com.skype.skype[116] Main starting with pid 116 parent pid 89
    1/30/11 4:13:23 PM Skype[116] SkypeApplication::init called
    1/30/11 5:12:33 PM com.apple.WindowServer[69] Sun Jan 30 17:12:33 Troy-Lindstroms-MacBook.local WindowServer[69] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/30/11 5:12:34 PM com.apple.RemoteUI[169] CoreAnimation: rendering error 501
    1/30/11 5:12:46 PM com.apple.launchd.peruser.501[89] ([0x0-0x9009].com.skype.skype[116]) Exited: Terminated
    1/30/11 5:12:49 PM com.apple.RemoteUI[169] HTTP2 Streaming Reads ON
    1/30/11 5:13:12 PM System Preferences[175] .scriptSuite warning for result type of command 'timedLoad' in suite 'SystemPreferences': the type NSNumber ('long') doesn't match the result Apple event code ('doub').
    1/31/11 12:17:59 AM com.apple.launchd[1] (com.apple.aslmanager) Throttling respawn: Will start in 5 seconds
    1/31/11 12:54:05 AM com.apple.launchd.peruser.501[89] ([0x0-0x18018].com.apple.Safari[180]) Exited: Terminated
    1/31/11 1:31:00 AM com.apple.launchd.peruser.501[89] (com.apple.AirPortBaseStationAgent[113]) Exited: Killed
    1/31/11 1:31:24 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/31/11 1:33:28 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/31/11 1:33:29 AM com.apple.WindowServer[67] Mon Jan 31 01:33:29 Troy-Lindstroms-MacBook.local WindowServer[67] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    1/31/11 1:33:31 AM com.apple.fontd[66] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] ALF error: cannot find useragent 1102
    1/31/11 1:33:48 AM com.apple.UserEventAgent-LoginWindow[76] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/31/11 1:33:48 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/31/11 1:33:50 AM fontd[96] Database content version mismatch (stored(15) != expected(14))
    1/31/11 1:33:54 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[105]) Exited with exit code: 1
    1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
    1/31/11 1:34:13 AM com.apple.coreservicesd[44] ThrottleProcessIO: throttling disk i/o
    1/31/11 1:44:00 AM com.apple.launchd.peruser.501[86] (com.apple.AirPortBaseStationAgent[107]) Exited: Killed
    1/31/11 1:44:10 AM com.apple.launchd[1] * launchd[1] has started up. *
    1/31/11 1:44:43 AM com.apple.launchd.peruser.501[86] (com.apple.ReportCrash) Falling back to default Mach exception handler. Could not find: com.apple.ReportCrash.Self
    1/31/11 1:44:43 AM fontd[95] Database content version mismatch (stored(15) != expected(14))
    1/31/11 1:44:43 AM fontd[95] Failed to open read-only database, regenerating DB
    1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] ALF error: cannot find useragent 1102
    1/31/11 1:44:44 AM com.apple.UserEventAgent-LoginWindow[79] plugin.UserEventAgentFactory: called with typeID=FC86416D-6164-2070-726F-70735C216EC0
    1/31/11 1:44:45 AM com.apple.launchd.peruser.501[86] (com.apple.Kerberos.renew.plist[108]) Exited with exit code: 1
    1/31/11 1:44:45 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/31/11 1:44:57 AM com.apple.fontd[95] FODBCheck: foRec->annexNumber != kInvalidAnnexNumber (0)
    1/31/11 1:44:58 AM [0x0-0x8008].com.skype.skype[112] Main starting with pid 112 parent pid 86
    1/31/11 1:45:00 AM Skype[112] SkypeApplication::init called
    1/31/11 2:00:28 AM com.apple.launchd[1] (com.apple.suhelperd[141]) Exited with exit code: 2
    Can anyone see the issue or tell me what I need to do to fix this thing???

    Which MacBook model? Did it come with OSX 10.6 or did you upgrade it?

  • I recently repaired disk permissions on my mac HD and now my on-board speakers wont work, the icon is greyed out and only works when my headphones are plugged in.

    I recently repaired disk permissions on my mac HD and now my on-board speakers wont work, the icon is greyed out and only works when my headphones are plugged in

    Try to put your headphones several times in and out from your connection, might be the switch is stuck. Normally it should work again while trying to plug the headphones in and out!

  • Repair Disk Permissions Issues

    I'm not sure I am posting this in the correct community but here goes . . .
    I have a 17" Macbook Pro running the latest version of Snow Leopard. It is almost 2 years old and I have 4 gb RAM.
    Recently, it seems to be slowing down and I have to run repair disk permissions 2-3 times a week to recoup a little speed. I also delete my Firefox cache regularly to try to gain a little there. I do make a few videos in iMovie and initially I thought that was the problem but this week I have not really worked in iMovie much and it is still slow. There seems to be some issues in the log of the repair permissions. I hope they show in this image. I don't know what these mean or how to fix them. It is the "permissions differ" entries I am confused about.

    You can ignore those permissions per support article
    http://support.apple.com/kb/TA21090
    Since you brought up iMove, I suspect your storage is nearly full as this most certainly causes the computer to slow down. video files are the biggest culprit.
    Look in your Activity Monitor and reduce the drive space by copying to a external, Disk Utility HFS+ formatted external powered drive of unnecessary files so your boot drive is ideally below 50% filled (yea I know but the computer slows down after that) and not more than 75% filled.
    Once you have done that. Get another newer external powered HFS drive and download the free Carbon Copy Cloner and clone the internal drive to the external.
    Hold option and boot off the external clone, test it out then use Disk Utility to erase the internal and then reverse clone the external onto the internal, this will defragment and optimize your drive so the OS and programs are on the fast part of the drive, not the slow parts.
    Reboot into the internal and run off of the free OnyX's maintainence and cleaning aspects and reboot.
    http://www.titanium.free.fr/
    Sir speedy machine here we come!
    Now of course you may have other issues that could be causing your slow down, like not enough RAM or some sort of failed process or leftover program, tweaks or simply a slow Internet.
    You can opt to simply reinstall OS X 10.6 ( by holding c and booting off the installer disk ) over your installed version (doesn't touch files or programs) then immediatly Software Updating until clear, that will clean anything hanging out in OS X.
    If you still have slowdowns, then it's in what geeks call "User land" basically something installed outside of root, like a program or only runs in user, not in OS X.
    For that you need to create a new user, transfer your files via the Shared Drop and wean yourself off the old user and finally delete it. Also install all new versions of your third party programs removing the originals first.
    That should do it.

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