FCP Dropped Frames on HD Capture - No Warnings

Hi,
I've been having a devil of a time capturing HD video on my Mac Pro (specs below).
I'm capturing about 45 minutes of video from a MiniDV HD camcorder (Sony HDR-HC5). Not sure what camera shot the footage. It seems that every time I capture, FCP creates more than one file, and in every case there is a gap of missing frames between the files. The shot is continuous (no tape stopping) for that entire length of time, which is why I expect to see only one file. There is no file size limit on the capture, and the time limit for capture is 64 minutes - well exceeding the footage duration.
Each time I try the capture the breaks happen at different times in the footage. Sometimes near the start (within a few minutes) and in other cases after 27 or more minutes. The breaks later in the capture seem to be short bursts of 1 minute or less then the capture settles down and goes continuous.
I'm thinking a process or bus thing that happens at some interval, but I've shut down all applications except FCP after a fresh boot. I also unmounted and disconnected all external drives on the Firewire ports. The USB drives are unmounted but not disconnected. I've also disabled Time Machine.
My capture drive is an internal SATA drive formatted as Mac OS Extended (no journaling) and was freshly wiped, formatted and restored - so all space should be contiguous.
Any ideas welcome. I can recapture over the gaps and piece the footage together - but I shouldn't have to. This should work.
Specs and tech details:
Machine: Mac Pro (2x2.8 GHz Quad Core Xeon), 10GB RAM, 360GB AND 100GB internal SATA
Mac OS X 10.5.7
Capture volume: Internal secondary SATA freshly formatted
Capture Setting/Easy Setup: Apple Intermediate Codec, 1080i60 (failed also with the 1080i60 HDV setup)
I've tried the capture with iMovie '09 with the same split file result. I've had one tape capture in tack, but have not been able to duplicate that experience.
Any ideas are welcome.
Thanks,
Sean

I'm finding that although random, I think the issue is the camera or tapes, though I'm not sure why.
Watching the video on capture, I see the video on the camera monitor pause though I hear the tape continue and then it seems to catch up. At that stage FCP create a new file. I've inspected the tape at these places and it seems fine. It also seems to play fine again once I reinsert the tape. It may or may not pause again later in the playback. I've seen this pause with and without capture happening.
Now I'm looking for ideas on how these tapes might exhibit this issue. Is this my camera (which is very new) or a tape issue (but 3/4 tapes seems a high percentage). Anyone with experience with this or anything I can check to provide more data to debug?
Thanks,
Sean

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