FCP or Compressor Audio Problem - Please Help!

Please Help!
I have completed my wedding project in Final Cut and it includes 4 extra stereo tracks (music etc) on the Final Cut Time line, therefore 5 stereo tracks in total. Music was just imported into the browser and then placed according in the time line.
When I export the whole project to Compressor, the video compresses fine into the DVD best quality format but the audio compressor has only compressed a SEGMENT of the FIRST stereo tracks?!
Totally Bizarre.. My client is waiting for the DVD and I’m at total loss!!
Desperate workaround (but want to avoid) If I have too i tried rendering the whole movie to a QT movie, then importing that into DVD Studio and just using the audio from that (which is ok) in my DVD project! But I don’t want to do this as I have not properly compressed the audio along with the video in the DVD best settings preset in compressor.

No I don't think so.. I use Switch to convert the .whatever files into .aff compliant files. Something has obviously go a miss somewhere during my edit, I just cannot think where. I did ask before if there was anyway to check for compression markers as the orginal problem seemed to be rendering just only a section of the audio. I did a clear markers control+' which clears markers on the timeline but not sure where that leaves compression markers. As I imply, I didnt deliberately saet any compression markers but maybe some crept in there?
Also I found it odd why SP pro originally came up with just "Error" when I tried to export the project to it? I tried a fresh sequence with a small amout of video on it and it exported fine into Soundtrack Pro (SP).
Additional question: What is the purpose for the mix down in the Sequence settings then? I seemed to do the trick for me? Should I include this in my work-flow because it is not always necessary to use Soundtrack Pro just for laying down a music bed?
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