FCP video chapter markers not accepted by DVD SPro

When I had FCP chapter markers in the timeline and then used compressor, they appeared in DVD Studio Pro. But in realizing that I couldn't cut out any footage in FCP without ruining all of the markers I had made following that point in the timeline it was suggested that I add chapter markers onto the video itself. The markers were no longer visible as windows in the Canvas, we got them to appear in the Viewer (view-playhead sync-open). BUT... Now, these markers attached to the video (and not the Time line) appear to not be working when I open a compressed sequence in DVD Studio Pro. How can this delemna be solved?

Ok, so if this is true (about "Chapter Markers set in FCP to work in DVD-SP, they HAVE to be set to the Timeline"), does it not seem a little silly for FCP (using latest Studio updates etc) to give people the option of utilizing "chapter" markers set to the video if they don't actually work?
By the way I'm using all of the latest FCS updates and exported using File: Export: Using compressor and then opening up DVD SP and importing assets etc.
Could there not be an easier way rather than having to wait until the VERY end of the editing process to add Chapter markers to the Timeline because otherwise they get all wacked out of sink if you cut out or add any video/audio?

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