FCS2 Reverse Telecine problem with HG10

I have been using the three fingered salute version (Log and Transfer, followed by Compressor's "reverse telecine") of getting 24P files from my HG10 into FCS2. It's worked well with smaller files (a few GB), but I just tried the technique with two very large video files. The Log and Transfer operation works fine. They're approximately 1 hour each, and are around 50GB in size each. But when I try the reverse telecine approach, Compressor seems to just flat-out die out from under me on both files. No error messages. I looked in Console, but nothing there either. It just stops processing, deletes the partially encoded file, and just sits there.
There was a discussion here about this problem prior to the 6.0.1 update, but nothing since.
Again, this works fine for me on little files (a minute or two in duration).
Is there an alternate way of doing the reverse telecine on these large files? Maybe Cinema Tools?

I have never used Compressor for this as Cinema Tools has been rock solid for me every time.

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    We'll need some more details. Where is your footage coming from? Was it originally HDCAM and downconverted to DV? Was the audio recorded straight to tape or was it synced in post? Is it consistently one or two frames out of sync or does it drift out of sync? How was it digitized? If you open the clip in Cinema Tools and step through it frame by frame do you see any interlaced frames?
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    KEY `Kustantaja_id` (`Kustantaja_id`),
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    `Maa` varchar(50) default NULL,
    `Kirjailija_URL` varchar(50) default NULL,
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    `Kirjailija_id` int(11) NOT NULL default '0',
    `Kirja_id` int(11) NOT NULL default '0',
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    KEY `Kirjailija_id` (`Kirjailija_id`),
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    FOREIGN KEY (`Kirjailija_id`) REFERENCES `kirjakauppa.Kirjailija`
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    `Nimi` varchar(80) default NULL,
    `Maa` varchar(50) default NULL,
    `Kustantaja_URL` varchar(50) default NULL,
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