File Save As versus Ctrl+Shift+S

Is there a way to make the menu function File>Save As and the keyboard shortcut Ctrl+Shift+S behave the same exact way. 
When using the menus, the file automatically opens with the new name.  It also automatically makes it a PSD file (if something photoshoppy has been done to it).  It also doesn't make it a copy.
When using the keyboard, you have to select the file type from the list.  It doesn't automatically open the file with the new name (frustrating if you are still editing).  And it always makes it a copy.
Is there a setting I have turned on or off?  This behaviour runs through the CS5 suite, Photoshop, InDesign, and Illustrator. 
Please send any suggestions or tips to correct this.  It is so much easier to use the keyboard short cuts but takes longer due to the behaviour.
Thanks,
Gilley Estes
Adobe CS5 Suite

Thank you for the responses.  I suspect I haven't explained the situation very well.  My first detailed explanation was deleted (by me after accidentally hitting Ctrl+A then delete; there isn't an undo in this forum...).
Let say for example I have opened a JPG called Image_Tree.jpg.  I do some photoshoppy things to it, like add a layer and an effect.
If I press Ctrl+Shift+A, the Save As dialog opens.  I change the file name to Image_Tree_Modified but the file type remains at JPG.  I have to manually select PSD.  It also automatically makes it a COPY.  So I have to delete the word COPY from the file name.  After clicking Save (or pressing Enter), my JPG file is still the one open in Photoshop.  It doesn't automatically open the newly saved PSD file.  I have to close the JPG and open the PSD.  This can be a problem if I continue making edits to the image and accidentally press Ctrl+S without first opening the new PSD file. It overwrites the JPG file with my changes.
Now taking the same JPG file with the photoshoppy elements...
If I go to File>Save As, basically things behave in a way I would call normal.  The file type is automatically set to PSD and the file IS NOT specified as a COPY.  Also after clicking Save (or pressing Enter), my newly saved PSD file is automatically opened for me to continue working on it.
Maybe it is just me but I would expect the behavior between File>Save As and Ctrl+Shift+S to be exactly the same and they aren't.  This is true for the products across the CS5 suite.  Photoshop, InDesign, and Illustrator.
I have tweaked a few keyboard settings but only to make some hotkeys.  For example, Ctrl+Shift+C is Image Crop on my computer.  Ctrl+Q is Image Trim.  Other than that, I have left the system the same as it was out of the box.  In fact I had to replace my personal settings one time by renaming a file then launching Photoshop again.  This undid all my personal settings.  The only ones I have reset are the one mentioned above.
I hope this very long response (sorry for the length) helps explain better what I am noticing and asking.
Thanks again for the responses and any help.
Regards,
Gilley Estes

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