Files captured with FCS2 not working in FCE 3

Not sure which forum to post this in so I'll try this one:
I have FS2 on my G5, FCE 3 on the Mini
For logistical purposes, I capture SD DV footage on the G5, using FS2. Took that HDD to the other puter, created a new FCE project and imported the QT movies I captured. I have done this in the past with older versions of FCP with no issues.
This time, the clips are coming in with only one audio track, as opposed to the two mono tracks they should be. Is this just a compatability issue with the two issues? Surprising cause I thought both would create the same kind of QT movie.
Playing the files with QT player everything looks OK.
Nothing wrong with the original tapes, both audio tracks there and they work perfectly within FCS
The only thing I can think of: The G5 which captured the clips is running Tiger with QT 7.1 and the Mini still running Panther with QT 6.5
Any thoughts? Thanks

Both systems should probably be running the same QT version.
-DH

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