Files not linking correctly

So kind of a weird issue. I have a folder called "Project" inside that folder is the indesign file then a "links" folder that contatins jpgs/eps etc...
Now when I decided to copy the entire "Project" folder to the desktop then opened the indesign file in there... for some reason all the links were still pointing to the orginal version instead of the files links in the duplicated version. On co workers computer this isnt' happening but mine it is? Anyone have a clue what's going on here??? Any help wold be awesome!!!

I think you all have missed the point here.
Sure, you can relink to folder, or you can package and have ID rewrite the links to the package folder, but that has nothing to do with HOW links work. If you COPY a .indd file to a new folder it keeps the same links, so neither of those suggestions will make any difference on the same machine UNLESS the link paths EMBEDDED in the file cannot be found.
Packaging works for MOVING a project to a new location because it takes the links along, and since the old locations are no longer accessible ID starts to look for them in the current directory. Relink to folder would only work if the the relinked folder also happened to be in the same directory as the ID file, and the two are moved together (essentially doing an artificial "package"). As long as ID is able to see links in the original locations, it will use them. On the same machine, either option can be used to create a copy with new link locations (and package is easier), but if you copy the folder again to another location on the same machine you just recreate the problem.

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Thanks for your reply, I ran it through Media Info. Here are the results:
Container & general information:
MPEG-PS: 290 Mib 4min22s
1 Video stream: MPEG video
1 Audio stream: AC-3
First Video Stream:
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First Audio Stream:
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Please let me know where to go from here. Thanks so much!
Date: Fri, 11 Nov 2011 10:50:15 -0700
From: [email protected]
To: [email protected]
Subject: HELP....AVCHD / MPEG files not playing correctly!
    Re: HELP....AVCHD / MPEG files not playing correctly!
    created by Ann Bens in Premiere Pro CS4 & Earlier - View the full discussion
Welcome to the forum.A screendump of what these SD files exactly are would be very nice.Run them throught Media info.http://mediainfo.sourceforge.net/en
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http://www.projectseven.com
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