Filters change in and out points?

This is the first time this has happened.
When I add certain 3rd party filters and/or composite a layer above my clip, the in and out points appear to change in the clip (i.e. a different portion of the clip is now in the time line.
When I double click the clip, the incorrect portion of the clip is loaded into the Viewer window, but when I do a Match Frame, the correct portion of the clip is loaded in the Viewer window.
Also, when the incorrect portion of the clip is loaded in the Viewer (like when I double click it to load), the current timecode display (upper right) is italicized. It is actuallly the correct timecode, but the video is incorrect and the timecode is italicized.
I did a Save As..., created a new sequence and cut and pasted the contents of the problem sequence, and set up a new project and cut and pasted the sequence in there to see if there was corruption, but I had the same problem there. i also trashed FCP preferences.
I have a Mac Pro dual Quad 3Ghz running OS X.5.4
I searched everywhere for "filters changing in and out points" and "Italicized timecode" and everything else I can think of, and found nothing. Anyone have any ideas?
Thanks!

Have you tried trashing render files with Render Manager and re-rendering?
rh

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