Final Cut Express HD won't recognize .mov / quicktime files.

I have a MacBook Pro 13-inch with FCE3 installed. I'm using OSX 10.6.6. My camera doesn't put video out through a firewire, only usb, meaning FCE can't recognize it (to the best of my knowledge). So, to get around that, I uploaded the video through iLife '11 and converted all my video into one long .mov/quicktime file. When I try to import the video, I get a "file error" message.
Any tips on how I can get the video form iMovie to FCE? If it means not using quicktime, I'm fine with that, too.
Thanks!

Well, to repsond to Ian, I don't have FCE4. I have FCE3. I'll upgrade eventually, though.
And I have a Cannon FS20. I did what you said in the quicktime player. Here's the format:
"H.264, 960 x 540, Millions Linear PCM, 16 bit little-endian signed integer, 2 channels, 44100 Hz."
The video plays fine in iMovie '11. I even tried the "share with Final Cut" tab in iMovie, but the video still wouldn't work in FCE3.
But I might add that it's not just the video from my camera that doesn't work in FCE3. It's all quicktime video. Even video that worked in FCE3 on my old Powerbook G4 now don't work in the same in FCE3 for my MacBook Pro.

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