Finder Window "Inactive" when clicked on and vice versa

For some reason, windows I click on in the Finder will become inactive and won't become active unless I click off of them on the desktop. The behavior continues until I restart the finder. I was wondering if this was maybe an issue specific to Intel Macs since it's happening to me on my new Intel Mac mini.
I should also note that this behavior is completely random as far as I can tell. Usually just closing all the open windows and opening a new one will fix it, but it usually comes back shortly after. Restarting the Finder seems to be the best way to get rid of it.
Has anyone seen this and/or know a way to fix it?

lains_navi,
If this behavior started after the 10.4.6 Update, I would recommend that you download and reinstall the Mac OS X 10.4.6 for Intel.
;~)

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