FireWire 400 slowdown

I was testing some notebook drives on the FW400 port of the MacBook pro. Average write speed = 32MB/s
Then I tested all those same drives (in FW400/USB2 enclosures) on the USB 2.0 port. Average write speed = 20MB/s.
I went back to test the drives again on the FW400 port. Now the average write speed is down to 20MB/s -- almost as if they now think they are USB drives.
I've reset PRAM. I can't reset ports with Open Firmware because that doesn't apply to Intel Macs. Is there some command in Terminal that resets the ports? Any other ideas?
Multiple Macs   Mac OS X (10.4.5)  

I may not have powered them down since the USB 2.0 requires an A/C adapter.
But I turned the MacBook Pro off for 24 hours and ditto for the drives. This morning, same thing. Slow writes.
But you've given me an idea. I'm going to connect the A/C adapter, run on the USB 2.0 port, power down, then try the FW400 port.

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