FLATTEN IMAGE LOSES CONTRAST

I'm using a Windows 7 icore7 machine. The file I'm working on is composed of six layers: 1) a masked Levels layer; 2) a masked Noise layer; 3) a masked Hipass layer; 4) a convert to BW layer; 5) a copy of the background layer; 6) the background layer. All the eyes on the layers are ON.
When I Flatten Image the contrasty look I've created with the Levels adjustment layer AND with the Hipass layer disappears and the flattened image no longer exhibits those qualities - in other words it reverts back to being soft, low contrast.
All the eyes are ON.
I tried various combinations of MERGE VISIBLE and the same thing happens.
I swapped Hipass for Unsharp Mask and for Smart Sharpen and even more weirdness happens - These filters have no effect at all.
Short of a re-install, what can I do?
Thanks....
Charles O. Slavens 

This is basically how you make images intended for viewing on the web.
First find out what is the average pixel count size of the monitors of your intended viewers. This is a link to a web site that can give you a clue for the general trends http://www.w3schools.com/browsers/browsers_display.asp and if you are interested in specific group and web sites you can use tools like this http://www.tastyplacement.com/monitor-size-statistics-for-web-design-html . After  you know the average pixel count size of the monitors of the intended viewers then you can decide how large as pixel count you want your images to appear in that space. You have to make this decision by viewing your images at 100% zoom. At 100% zoom one pixel of your image fits into one pixel of your monitor. When you zoom out less then 100%, a group of pixels from the image will be represented using their average color with one monitor pixel and this causes loss of detail and changed image appearance like the one you are experiencing. When you zoom in more than 100%, one pixel from the image will occupy a group of monitor's pixels and this will give enlarged pixel appearance (steps like effect) jaggies. Web browsers by default display images at 100%.  If your images are for a web site that is yet to be designed, and you are one of the design decision makers, create a new Photoshop document with a pixel count that is the average pixel count size of the monitors of your intended viewers and having in mind the other elements of the web page, decide the amount of space your images will be occupy in the overall design. If your images are going to appear on existing web site/s. Visit the site and make a screen capture of your screen, go back in Photoshop, choose to create a new document which automatically is set to the the pixel count of the content on your clipboard, and after that paste the screen capture. Then create or scale down your images to fit in the desired space. Again, the final effect will be what you view at 100% zoom. With all that said, have in mind that if your images are going to be posted on certain web site like this Adobe forum - images posted here are displayed in the messages as previews with certain size limit. Images larger than this limit will be scaled down automatically by the site but if you click on the preview image, it will show the full size as it appears at 100% zoom in Photoshop. You have to check how your images will be treated on the web sites you plan to use and then you can create them with the optimal pixel count size.
Another thing that you also have to be aware is that you don't have control over the physical size of your images because different monitors and display devices have different size pixels and this will make an image with the same pixel count displayed with the same zoom to appear at different physical sizes on the various monitor models and devices such as smart phones.

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