FLV gone from Media Encoder - which formats work on iOS anymore?

The withdrawal of the FLV format has thoroughly confused me. FLV is the only video format I've ever succesfully worked with in AIR apps on iOS. MP4, MOV etc. - all these formats never played when I tested them on iOS devices. Only FLV. I know that StageVideo gives some more options, but my question is:
With FLV getting phased out, which video format options will work in AIR apps for iOS (without using StageVideo) at this point?

I run CS6 at home, but I talked with one of the IT guys at work and he told me that if you have a CC account, you should still be able to download CS6 versions of Adobe applications. If that is true (and not just a corporate account thing), you could download the CS6 version of Media Encoder and use that if you needed to still be able to create FLV files. But if you wanted to give H.264 another try, there numerous preset encoding options under the H.264 encoding type for Apple devices that you could try as an alternative to FLV. In my experience with videos, you're going to get a better quality video anyway at a smaller file size using H.264.

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