Folder says 62gb but files inside are Zero bytes

Hola guys.
I usually come here with some weird issues related to FCS but this is a bit different and I'm not sure where to put it. I have some Pro Res HQ footage in a folder that's about 62 GB combined. I was converting them through Compressor 4 to Pro Res LT but I canceled the batch because I only needed specific files... Then I noticed that 2 files wer unrecognized and didn't have either a preview or a file size. I went back to Compressor and converted the files I needed and left the office. I came back to find that multiple files are now unrecognized and without file size... The folder still says 62 GB but the files that still work are 32 GB in total size therefore the rest of the footage and their sizes are still be calcualted... what do?

That link was extremely helpful.
I have managed to get the fonts working on my windows machine by doing the following:
1) download the Mac OSX package of fondu and install it:
http://fondu.sourceforge.net/index.html#Downloads
2) open a terminal window on the mac and convert the fonts using fondu:
cd ~/Library/Fonts
/usr/local/bin/fondu Berli*
that 2nd command converts all the fonts starting with 'Berli' into pfb fonts. Not sure what these are exactly but I think they're unix fonts.
3) Move all the resulting pfb and bdf files to my windows machine.
4) Download and install the trial version of CrossFont on my windows machine and use it to covert the files from pfb to otf.
5) use the font control panel to install the resulting otf fonts.

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I don't even know where to start. I guess first I'll list some background information:
My wife and I share a iMac which she uses it as her workstation for illustration and I use it as Plex Media Server and Transmission etc. So she would normally use it by day, but my account would be always logged in in the background and I use SSH and Remote Desktop to control my account.
And since the ultimate symptom are I don't how many zero byte files, here are some configuration information.
1) iMac 27" late 2012 with 128 GB Apple SSD and 3TB HDD
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3) The configuration is odd because I wanted to use both fusion drive and BOOTCAMP. So there is a BOOTCAMP volume as well.
This happened in the past couple of days. At first my wife was complaining about loosing wifi connection and keyboard connectivity problems. For wifi I typically instructed her to turn wifi on and off or try to reboot the computer. For the keyboard problem, it turned out to be a software problem not Bluetooth because disabling a third part IME seemed to resolve the problem.
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Then I hoped upgrade system to 10.10.3 would help (it was 10.10.2). And it did. Now finder can open. Keychains still missing and could be reset to default. But at least I could open Keychains Access now. And from there I created a new login keychain. And my wife's account didn't have this keychain issue, I assumed the situation was under control.
Now, the wired thing happened. My wife fired up Photoshop, it's reporting problems loading preferences. Moved preferences file else where, it said unexpected EOF. Looked it up and ended LAYOUT.psp or something became zero bytes. I deleted it and let photoshop create default one. Now photoshop works. But the PSD my wife panicked about earlier became zero byte.
Verified the disk again, appears to be OK, again, appears to be OK.
The only thing worth mentioning was the amount of something called "Metadata Volume" and "double redundancy". It says "The Logical Volume Family has a 4482 MB Metadata Volume double redundancy". I'm not sure whether or not this is usual.
Now I'm trying to recovery all the PSD files on the disk with a Data Recovery App. But while I'm waiting I found some other files now its zero bytes. This really worries me. And I'm still not sure what cause the problem or even what the problem was or is. I suspect it has something to do with fusion drive as when I do rsync -W --inplace, the speed is normally 20~30 which is a bit low to me.
If you read this far, I really appreciate it. I'm sorry it's so long and unclear. It's because its like nothing I encountered before and the problem is hidden with many little issues on the surface.
But I will try to summarise my question:
1) What could possibly be the root cause of those problems
2) What happened to those files.
3) Is there anyway to recovery them other than standing all the sectors of the disk
4) Would it be better off with fusion drive.

I don't even know where to start. I guess first I'll list some background information:
My wife and I share a iMac which she uses it as her workstation for illustration and I use it as Plex Media Server and Transmission etc. So she would normally use it by day, but my account would be always logged in in the background and I use SSH and Remote Desktop to control my account.
And since the ultimate symptom are I don't how many zero byte files, here are some configuration information.
1) iMac 27" late 2012 with 128 GB Apple SSD and 3TB HDD
2) A custom fusion drive with 1 logical volume consist of 3 physical volumes.
3) The configuration is odd because I wanted to use both fusion drive and BOOTCAMP. So there is a BOOTCAMP volume as well.
This happened in the past couple of days. At first my wife was complaining about loosing wifi connection and keyboard connectivity problems. For wifi I typically instructed her to turn wifi on and off or try to reboot the computer. For the keyboard problem, it turned out to be a software problem not Bluetooth because disabling a third part IME seemed to resolve the problem.
Then at one night, she accidentally unplug the iMac while it's on (it's always on, and my wife never reboot or shut it down unless I intervene). No she freaked out as she couldn't remember if she saved her illustration work. Luckily she did. And at this point of time, after booting it up, the PSD file was intact and the latest version. Okay, we moved on. I didn't worry about too much about the power failure because this happened before. And normally Disk Utility in Recovery HD would fix the problem.
Then on the day after, it started loosing sound. So I tried to fix it. Now when I tried to login, it said "Cannot find "login" keychains". Choose "Restore to Default", doesn't work and Finder was keeping crashing and relaunching. Hopping a restart would fixed but it didn't. Then I tried all regular maintaining techniques include fix disk, fix permission, clear all sorts of caches with OnyX. Because there was a power failure, the disk did need some repairing and according to Disk Utility, it appeared OK now, but the problem was still there.
Then I created a new user, works seemingly fine. Deleted my old account and created it agin with the same UID, same problem. Almost all the applications failed to launch except "Notes" and "Maps". It seemed to be a user problem but using the same user ID but new Home folder, the problem came back. This baffled me. I never came across something like this.
Then I hoped upgrade system to 10.10.3 would help (it was 10.10.2). And it did. Now finder can open. Keychains still missing and could be reset to default. But at least I could open Keychains Access now. And from there I created a new login keychain. And my wife's account didn't have this keychain issue, I assumed the situation was under control.
Now, the wired thing happened. My wife fired up Photoshop, it's reporting problems loading preferences. Moved preferences file else where, it said unexpected EOF. Looked it up and ended LAYOUT.psp or something became zero bytes. I deleted it and let photoshop create default one. Now photoshop works. But the PSD my wife panicked about earlier became zero byte.
Verified the disk again, appears to be OK, again, appears to be OK.
The only thing worth mentioning was the amount of something called "Metadata Volume" and "double redundancy". It says "The Logical Volume Family has a 4482 MB Metadata Volume double redundancy". I'm not sure whether or not this is usual.
Now I'm trying to recovery all the PSD files on the disk with a Data Recovery App. But while I'm waiting I found some other files now its zero bytes. This really worries me. And I'm still not sure what cause the problem or even what the problem was or is. I suspect it has something to do with fusion drive as when I do rsync -W --inplace, the speed is normally 20~30 which is a bit low to me.
If you read this far, I really appreciate it. I'm sorry it's so long and unclear. It's because its like nothing I encountered before and the problem is hidden with many little issues on the surface.
But I will try to summarise my question:
1) What could possibly be the root cause of those problems
2) What happened to those files.
3) Is there anyway to recovery them other than standing all the sectors of the disk
4) Would it be better off with fusion drive.

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Folder says 62gb but files inside are Zero bytes

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