Font embedding problem in PDFs

Since upgrading to Leopard from Tiger-
We are losing fonts embedded into pdfs, either saved through Preview or Adobe Indesign CS3.
The preview of pdfs, both in the finder windows and in Entourage email attachments are missing fonts too. Sometimes opening them resolves the issue, but not usually.
This has occured to both User and System level fonts.
We have cleaned the font caches, but this only provides a temporary fix.
We have tried not using our Suitcase Fusion and just letting FontBook manage the fonts on this machine, the problem still manifests itself.
The only change in the equation from a perfectly operational machine was the change from Tiger to leopard.
Any thoughts/help = greatly appreciated.
Matt

Update: Reader 8 on a PC displays everything fine, so it's a matter of updating

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