Font Issues, Looking for clarification

Good Morning,
I am trying to insert pages into a manual. The pages I am inserting are CAD drawings that were created with AutoCAD Civil 3D and printed to pdf.
1) Drawing #1.pdf
2) Drawing #2.pdf
Sometimes when I add the drawings to a new pdf using the insert command, the fonts mess up and show little squares instead of a random letter, such as f or ".
There are about 100 drawings to insert. Can anyone explain what is going on here? Or some settings to check? I thought PDF was supposed to be portable document format.
I have tried a few things such as:
#1 Embed font, #2 Non-embedded font, this makes squares.
#1 Embed font, #2 Embed font, this does not make squares. (Font is the same, ArialMT)

I was hoping to avoid having to reprint all the drawings, in the future I'm going to embed fonts in anything I do to prevent this from happening again. It is frustrating as you will be inserting drawings (from other users) and everything looks good. Then when you insert the 99th drawing, it messes up 30% of the previous drawings fonts.
Anyway thanks for the input.
-JK

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