Font issues with InDesign CC

I've been happily producing a monthly trade magazine for years with InDesign CS5.5 V 7.5.3. No problems. Last month I started using InDesign CC. First sign of trouble was that, when I sent the proof (pdf made with Acrobat XI Pro), to the client, many of the headlines (Calibri) would only partially print, or wouldn't print at all. Then, when the magazine went to the commercial printer (packaged from InDesign CC and with an IDML), many (not all) of the text (Palatino Linotype) ran together and stories were short, leaving white space. It was a disaster! (Fortunately, the client proofed it before presstime, so they took the blame.) What's the problem here?

Here it is January 2015 and I have font problems with Adobe CC. Been using apps and Font Book for years without font troubles, and since I started using Adobe CC, every single day I have an issue. Specifically, just now, working in InDesign: I have been using postscript fonts for Franklin Gothic forever. Some of them disappeared from my font list, so when I opened a document using them, they are shaded pink. I found Franklin Gothic URW in typekit and loaded those. Changed all my fonts to fonts from that set, yet I still get error messages. When I open Find Font, I see three FranklinGothic-Medium in the list with yellow warning signs. If I select one, Replace with the comparable in the FranklinGothic URW family, the Change All button is shaded and I can't select it. And then when I try to save as pdf, I get a Font Missing warning. And this has happened with other font families, so not specific to Franklin Gothic.
So frustrating.

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