Fonts in Mail 5 not working

I just upgraded to Lion yesterday, and when using the new Mail I noticed that my custom fonts were not displaying anymore. Only the fonts in the messages themselves work, but I can no longer change the column or inbox fonts. Is there any reason this is happening? Is there a way to fix it?
I am running 10.7 on a 17" MacBook Pro.
Any help would be very much appreciated!

Does the issue disappear with a reboot?  If not, try removing your Preferences folder, or clearing your Cache (under Preferences).

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