Former itunes installation from external hdd syncing with new installation.

Hello, i need some help!
My laptop has a severe mainbord damage, it's not economical to repair it.
so, i'm going to mount the 2,5" hdd in an external hdd case with usb.
in addition, i get a new iphone due to fluid damage.
so my itunes with the iphone backup is on the external hdd, to run the external hdd as a boot hdd is not possible.
how can i solve the problem to have my backup on my new iphone?
would be great to have any ideas!
thanks in advance

The iTunes library is not stored with the application - it is stored separately and accessed by the iTunes application so I'm not sure how installing an iTunes update or removing and re-installing iTunes would delete your entire iTunes library where all this data is stored. And you don't maintain a backup of your important data including music and video purchased from the iTunes Music Store? This is important regardless the platform but more so when using Windows with all the virus, adware and spyware concerns.
iTunes includes a preference setting to not automatically sync an iPhone automatically when any iPhone is connected. Be sure to select this first which doesn't require your iPhone being connected.
When your iPhone is connected, do not manually sync. At the iTunes menu bar go to File and select Transfer Purchases From - (the name of your iPhone).
This will transfer iTunes purchased content only from your iPhone to iTunes. Any music transferred to the iPhone from music CDs will not be transferred and the same for any movies transferred to the iPhone that were not purchased via iTunes.

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