Fragmented and distorted transitions (in rendered output)

Hi all,
I have a problem with exporting video wherein the transitions are fragmented and distorted. The source video files came from a Mark II EOS 5D. Here is a link to couple caps:
http://imgur.com/a/YEnY0
Do these frames show a common problem? Can anyone give me any leads as to what I might need to change?
I suspect it's something to do with the source video format, but my friend said FC prompted her to conver it to a preferred format, which she did.
thanks

These problems almost always are the result of editing material a non native FCP codec.
If the codec of the video being edited isn't ProRes, you'll need to convert it. Compressor works well for this purpose.
x

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