Frame Controls keeps turning OFF

Using Compressor 2.3 on PPC/G5 and Intel Mac both with OS 10.4.9.
Frame Controls turns off when applying preset to clip. Whether Custom preset or Apple preset the same thing happens. Presets have Frame Controls set to Automatic.
Again this is on 2 computers so it would be odd if it were preferences. I tossed preferences just in case and that didn't help.
I can see it go from Frame Controls go from Automatic to OFF as I go from Inspector to Batch window. YES the setting applied has/had Frame Controls on Automatic.
Anybody else experience this and/or have a solution?

I noticed the change in Compressor 3 (which I now have).
In my case I was trying to convert HD to H.264 and although the preset was set to "automatic" it apparently would turn off and NOT deinterlace whereas when I went from SD to H.264 it did deinterlace. That's what raised the concern.
Not quite what you describe in your 1 and 2 because I wasn't going to any from of DVD (MPEG2) but going from HD apparently required one to set it On in Compressor 2.3. I'll test this out in Compressor 3 but I think getting rid of "automatic" may avoid that confusion.

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