G4733DA w/ 4 internal HD's sometimes won't mount/boot to alternate HD-Why?

I own a G4 733 DA w/ 4 internal HD's which sometimes won't mount/boot to an alternate HD on an internal Sonnet PCI controller card (position 1 only).
I can also boot to either of the 2 HD's on the sonnet pci controller card (even though neither shows up on system profiler in OS X.4.10). One of which is a Seagate 7200rpm, 400GB which I am currently booted to right now (it's in slot 2 of the sonnet pci card and works fine) However, at times the HD on slot 1 refuses to mount on the desktop. When I remove the same hard drive it mounts fine on an ext. FW enclosure.
Is it possible that slot one on this sonnet pci card is starting to go out? And how do I know for certain since neither of the HD's on this Sonnet pci controller card show up on system profiler? Is this normal? Shouldn't every hard drives show up in Apple's system profiler? Even the ones on the pci controller card? Should I just try a separate HD on the same slot and see what happens? I have all of the drives cloned to a much larger ext. FW HD so I'm not really worried about loss of data since I have all drives backed up to ext. FW HD's.

Neither of the HD's on this Sonnet pci controller card show up on system profiler. Is this normal?
Yes, it is normal. Earlier versions (before Panther) of System Profiler would show the drives connected to a Sonnet PCI controller, but current versions just show the controller itself. Disk Utility should show the drives.
Each port on the Sonnet card can have up to two drives, one Master, one Slave. The Master should be at the end of the cable. If a Western Digital drive is alone on a cable, it should be set to Single. Drives on the Sonnet card that are set to Slave are not bootable.
Try swapping cables at the Sonnet card. If the same drive has problems, then it is the drive or cable. Try swapping just the cables.

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