Glibc: /lib exists in filesystem

Question

Hi, I haven't done a full system update in a while and I'm getting the following:
[wayne@badger ~]$ sudo pacman -Syu --ignore filesystem
:: Synchronising package databases...
core is up to date
extra is up to date
community is up to date
:: Starting full system upgrade...
warning: filesystem: ignoring package upgrade (2012.2-4 => 2012.12-1)
:: Replace udev with core/systemd? [Y/n]
resolving dependencies...
looking for inter-conflicts...
Targets (76): binutils-2.23.1-2 coreutils-8.20-1 cronie-1.4.9-1 curl-7.28.1-1 db-5.3.21-1 gcc-4.7.2-3
gcc-libs-4.7.2-3 glib2-2.34.3-1 glibc-2.17-1 gmp-5.1.0-1 gnutls-3.1.5-1 gtk2-2.24.14-1
harfbuzz-0.9.9-2 icu-50.1.1-1 inetutils-1.9.1-4 initscripts-2012.10.1-1 iproute2-3.6.0-2
iptables-1.4.16.2-1 iputils-20121126-1 khrplatform-devel-9.0.1-1 krb5-1.11-1 ldns-1.6.16-1
less-451-1 libarchive-3.0.4-2 libcups-1.6.1-6 libegl-9.0.1-1 libgbm-9.0.1-1 libgl-9.0.1-1
libidn-1.25-1 libldap-2.4.33-3 libmediainfo-0.7.61-1 libmp4v2-2.0.0-2 libmpc-1.0.1-1
libmysqlclient-5.5.29-1 libpulse-3.0-2 libsigc++-2.2.11-1 libssh2-1.4.3-1 libtool-2.4.2-7
libtorrent-0.13.2-2 libva-1.1.0-2 libzen-0.4.28-1 links-2.7-1 linux-3.6.10-1
logrotate-3.8.2-2 lvm2-2.02.98-1 mediainfo-0.7.61-1 mkinitcpio-0.12.0-2 mpfr-3.1.1.p2-1
mysql-5.5.29-1 mysql-clients-5.5.29-1 nettle-2.5-1 openssh-6.1p1-4 openssl-1.0.1.c-1
pango-1.32.4-1 pcmciautils-018-6 pcre-8.32-1 perl-sub-uplevel-0.24-1 pkg-config-0.27.1-1
ppl-1.0-1 rsync-3.0.9-5 rtmpdump-20121203-1 rtorrent-0.9.2-2 ruby-1.9.3_p362-1
screen-4.0.3-15 shadow-4.1.5.1-2 sudo-1.8.6.p3-1 syslog-ng-3.3.7-1 systemd-196-2
sysvinit-2.88-9 sysvinit-tools-2.88-9 taglib-1.8-1 udev-182-1 [removal] util-linux-2.22.2-1
wget-1.14-2 xfsprogs-3.1.8-2 xmlrpc-c-1:1.32.2-1
Total Installed Size: 627.83 MiB
Net Upgrade Size: 81.27 MiB
Proceed with installation? [Y/n]
(75/75) checking package integrity [######################################] 100%
(75/75) loading package files [######################################] 100%
(75/75) checking for file conflicts [######################################] 100%
error: failed to commit transaction (conflicting files)
glibc: /lib exists in filesystem
Errors occurred, no packages were upgraded.
I've searched on the /lib exists in filesystem error and all roads point to this page:
https://wiki.archlinux.org/index.php/De … i%3Ausrlib
I've followed as much as possible but I'm still getting the error.  The page says the following:
If after this the "pacman -Su" still has conflicts with /lib, this is likely because a package on your system other than glibc owns files in /lib. Such packages can be detected using:
$ grep '^lib/' /var/lib/pacman/local/*/files
These packages need rebuilding so as not to include the /lib directory. They can also simply be uninstalled and reinstalled again after upgrading glibc. The the final "pacman -Su" will successfully install glibc if there are no untracked files (see the next section).
What exactly does it mean when it says 'These packages need rebuilding so as not to include the /lib directory'?  Does this just mean just updating them using pacman?  The output of the given grep command on my system is huge (mainly with kernel-related stuff):
/var/lib/pacman/local/filesystem-2012.2-4/files:lib/
/var/lib/pacman/local/filesystem-2012.2-4/files:lib/modules/
/var/lib/pacman/local/gcc-4.7.0-4/files:lib/
/var/lib/pacman/local/gcc-4.7.0-4/files:lib/cpp
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/ld-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/ld-linux.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libBrokenLocale-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libBrokenLocale.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libSegFault.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libanl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libanl.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libc-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libc.so.6
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcidn-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcidn.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcrypt-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcrypt.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libdl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libdl.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libm-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libm.so.6
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libmemusage.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnsl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnsl.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_compat-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_compat.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_db-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_db.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_dns-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_dns.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_files-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_files.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_hesiod-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_hesiod.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nis-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nis.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nisplus-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nisplus.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpcprofile.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpthread-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpthread.so.0
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libresolv-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libresolv.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/librt-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/librt.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libthread_db-1.0.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libthread_db.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libutil-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libutil.so.1
/var/lib/pacman/local/linux-3.3.2-1/files:lib/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/extramodules
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/aes-i586.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/aesni-intel.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/crc32c-intel.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/salsa20-i586.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/serpent-sse2-i586.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/crypto/twofish-i586.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kernel/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kernel/cpuid.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kernel/microcode.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kernel/msr.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kvm/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kvm/kvm-amd.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kvm/kvm-intel.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/kvm/kvm.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/oprofile/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/oprofile/oprofile.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/platform/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/platform/iris/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/arch/x86/platform/iris/iris.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/aes_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/af_alg.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/algif_hash.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/algif_skcipher.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/ansi_cprng.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/anubis.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/arc4.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/async_memcpy.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/async_pq.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/async_raid6_recov.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/async_tx.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/async_xor.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/async_tx/raid6test.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/authenc.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/authencesn.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/blowfish_common.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/blowfish_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/camellia.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/cast5.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/cast6.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/cbc.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/ccm.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/crc32c.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/cryptd.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/crypto_null.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/crypto_user.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/ctr.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/cts.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/deflate.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/des_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/ecb.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/fcrypt.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/gcm.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/gf128mul.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/ghash-generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/hmac.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/khazad.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/lrw.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/lzo.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/md4.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/md5.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/michael_mic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/pcbc.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/pcrypt.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/rmd128.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/rmd160.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/rmd256.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/rmd320.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/salsa20_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/seed.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/seqiv.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/serpent_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/sha1_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/sha256_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/sha512_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/tcrypt.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/tea.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/tgr192.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/twofish_common.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/twofish_generic.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/vmac.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/wp512.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/xcbc.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/xor.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/xts.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/crypto/zlib.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/acpi/
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/acpi/ac.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/acpi/acpi_ipmi.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/acpi/acpi_pad.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/acpi/apei/
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/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/sch5636.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/sch56xx-common.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/sht15.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/sht21.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/sis5595.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/smm665.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/smsc47b397.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/smsc47m1.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/smsc47m192.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/thmc50.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/tmp102.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/tmp401.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/tmp421.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/via-cputemp.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/via686a.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/vt1211.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/vt8231.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83627ehf.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83627hf.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83781d.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83791d.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83792d.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon/w83793.ko.gz
/var/lib/pacman/local/linux-3.3.2-1/files:lib/modules/3.3.2-1-ARCH/kernel/drivers/hwmon

Answer 1

I have exact the same problem but i am using arch on a vserver, unfortunately there is only one arch preset available (i already asked my ISP for an update, but until now it's not sure when they can provide it...)
[root@vserver2048 ~]# pacman -Syu
:: Synchronizing package databases...
core 105.1K 236.4K/s 00:00:00 [####################################################] 100%
extra 1440.5K 1051.5K/s 00:00:01 [####################################################] 100%
community 1875.9K 1197.7K/s 00:00:02 [####################################################] 100%
:: The following packages should be upgraded first :
pacman
:: Do you want to cancel the current operation
:: and upgrade these packages now? [Y/n]
resolving dependencies...
looking for inter-conflicts...
Targets (12): linux-api-headers-3.7.4-1 glibc-2.17-2 libarchive-3.0.4-2 pth-2.0.7-4 libksba-1.2.0-2 libassuan-2.0.3-1 pinentry-0.8.2-1
dirmngr-1.1.0-4 gnupg-2.0.19-4 gpgme-1.3.1-5 archlinux-keyring-20130114-1 pacman-4.0.3-5
Total Download Size: 11.82 MB
Total Installed Size: 58.75 MB
Proceed with installation? [Y/n]
:: Retrieving packages from core...
linux-api-headers-3.7.4-1-x86_64 614.9K 664.5K/s 00:00:01 [####################################################] 100%
glibc-2.17-2-x86_64 7.7M 1207.1K/s 00:00:07 [####################################################] 100%
libarchive-3.0.4-2-x86_64 533.0K 1193.2K/s 00:00:00 [####################################################] 100%
pth-2.0.7-4-x86_64 75.9K 68.8M/s 00:00:00 [####################################################] 100%
libksba-1.2.0-2-x86_64 109.9K 136.2K/s 00:00:01 [####################################################] 100%
libassuan-2.0.3-1-x86_64 76.5K 128.9K/s 00:00:01 [####################################################] 100%
pinentry-0.8.2-1-x86_64 95.3K 426.4K/s 00:00:00 [####################################################] 100%
dirmngr-1.1.0-4-x86_64 163.9K 731.5K/s 00:00:00 [####################################################] 100%
gnupg-2.0.19-4-x86_64 1437.5K 1102.5K/s 00:00:01 [####################################################] 100%
gpgme-1.3.1-5-x86_64 207.8K 1851.6K/s 00:00:00 [####################################################] 100%
archlinux-keyring-20130114-1-any 344.0K 1534.3K/s 00:00:00 [####################################################] 100%
pacman-4.0.3-5-x86_64 508.1K 1516.4K/s 00:00:00 [####################################################] 100%
(12/12) checking package integrity [####################################################] 100%
(12/12) checking for file conflicts [####################################################] 100%
error: failed to commit transaction (conflicting files)
glibc: /usr/bin/tzselect exists in filesystem
glibc: /usr/sbin/zdump exists in filesystem
glibc: /usr/sbin/zic exists in filesystem
Errors occurred, no packages were upgraded.
I Already Tried Allans fix (http://allanmcrae.com/2012/07/updating- … e-install/) but it doesn't work anymore:
The Fix:
pacman -Sy
rm -rf /var/run /var/lock && pacman -Sf filesystem
pacman -S tzdata
pacman -U http://pkgbuild.com/~allan/glibc-2.16.0 … pkg.tar.xz
rm /etc/profile.d/locale.sh
pacman -Su --ignore glibc
pacman -Su
But when i do pacman -Sy; rm -rf /var/run /var/lock && pacman -Sf filesystem i get an error and my server doesn't come up after a reboot:
[root@vserver2048 ~]# rm -rf /var/run /var/lock && pacman -Sf filesystem
:: The following packages should be upgraded first :
pacman
:: Do you want to cancel the current operation
:: and upgrade these packages now? [Y/n] n
resolving dependencies...
looking for inter-conflicts...
:: kmod and module-init-tools are in conflict. Remove module-init-tools? [y/N] y
:: systemd and udev are in conflict. Remove udev? [y/N] y
Remove (2): module-init-tools-3.16-3 udev-175-1
Total Removed Size: 2.96 MB
Targets (4): kmod-12-1 hwids-20121203-1 systemd-197-4 filesystem-2013.01-1
Total Download Size: 2.12 MB
Total Installed Size: 14.22 MB
Proceed with installation? [Y/n]
:: Retrieving packages from core...
kmod-12-1-x86_64 92.4K 208.2K/s 00:00:00 [####################################################] 100%
hwids-20121203-1-any 281.1K 421.4K/s 00:00:01 [####################################################] 100%
systemd-197-4-x86_64 1788.3K 1604.7K/s 00:00:01 [####################################################] 100%
filesystem-2013.01-1-x86_64 6.0K 28.3M/s 00:00:00 [####################################################] 100%
(4/4) checking package integrity [####################################################] 100%
(1/2) removing module-init-tools [####################################################] 100%
(2/2) removing udev [####################################################] 100%
(1/4) installing kmod [####################################################] 100%
(2/4) installing hwids [####################################################] 100%
(3/4) installing systemd [####################################################] 100%
systemd-machine-id-setup: /lib/libc.so.6: version `GLIBC_2.17' not found (required by systemd-machine-id-setup)
udevadm: /lib/libc.so.6: version `GLIBC_2.17' not found (required by udevadm)
journalctl: /lib/libc.so.6: version `GLIBC_2.17' not found (required by journalctl)
systemctl: /lib/libc.so.6: version `GLIBC_2.17' not found (required by systemctl)
:: Append 'init=/usr/lib/systemd/systemd' to your kernel command line in your
bootloader to replace sysvinit with systemd, or install systemd-sysvcompat
Optional dependencies for systemd
cryptsetup: required for encrypted block devices
libmicrohttpd: systemd-journal-gatewayd
quota-tools: kernel-level quota management
python: systemd library bindings
python2-cairo: systemd-analyze
python2-gobject: systemd-analyze
systemd-sysvcompat: symlink package to provide sysvinit binaries
error: could not get current working directory
(4/4) upgrading filesystem [####################################################] 100%
warning: /etc/gshadow installed as /etc/gshadow.pacnew
warning: /etc/passwd installed as /etc/passwd.pacnew
warning: /etc/group installed as /etc/group.pacnew
warning: /etc/fstab installed as /etc/fstab.pacnew
warning: /etc/shadow installed as /etc/shadow.pacnew
error: extract: not overwriting dir with file lib
error: extract: not overwriting dir with file lib64
warning: directory permissions differ on sys/
filesystem: 755 package: 555
error: problem occurred while upgrading filesystem
error: could not commit transaction
error: failed to commit transaction (transaction aborted)
Errors occurred, no packages were upgraded.
I am grateful for any hint
Best regards,
Last edited by cinatic (2013-01-27 03:16:22)