Got iPhone 6 plus, lost almost all apps when synced with iTunes?? Won't completely back up/restore??

I got a an iPhone 6 plus last night and tried to restore it over iTunes (I backed up my 5s last night just before upgrading).  The restore seemed to go fine as always but then an error message came up saying 40 of my apps, the ones I use the most of course, could not be found.  None them will show up on my phone at all now.  I spent ours trying to get them back on my phone through iTunes to no avail.  I went ahead and downloaded them again through the App Store as they were still in the Cloud (I guess?) but now I'm afraid to sync to and back up my phone at all as I don't want to have to do this each time.  My Macbook Pro is getting old so I am wondering if I should just start syncing to my husband's newer iMac?  But then again, how do I sync to a new computer without losing everything on my phone??

Hi Since ios 7 everything can be done over WiFi you don't need to use your PC When you charge your iPhone it Automatically backs up to iCloud. I would Restore iPhone back to Factory Settings Do this over your WiFi. We have 2 iPhones & 3 iPads and have not used a PC for over a year Sometimes using a PC causes problems it puts things on you don't want. Cheers Brian

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