Greyed out folders can't be opened

I just downloaded a torrent file via Vuze and the file is in a folder "Vuze Downloads"
In fact there are 2 "Vuze Download" Folders, an extra one with a suffix 2
The one with the suffix 2 is visible and is empty (0 kb)
The original one is greyed out and has 3.5GB of files but I can't see them
I never had this before I upgraded to a new iMac 5K with OS X Yosemite
Why are these files duplicated?
Additional info. I have a SoftRaid external drive (RAID 5) but...these files are NOT on that drive, they are on the internal hybrid 3TB drive.
This is really frustrating.

No error message came up. It appeared to sync correctly, except that most songs were greyed out on iTunes as well as the iPad. The greyed ones had a little icon to the left of them that looked like a refresh button, but it didn't do anything.

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