H.264 Audio Out Of Sync in Media Encoder. Help Needed.

I use Adobe Premiere Pro CS3 and I find that the best way to get a good video with low file size is by Exporting to Media Encoder and using
the H.264 codec. Note, this is the codec by itself NOT the one used with the Quicktime preset.
Here's the problem : When I export these files, they always end up a few frames slower than what I have on the timeline and the audio is always
out of sync by just less than a second. Although it's a very small difference, timing is crucial in editing when it comes to dialogue as I'm sure anyone who uses Premiere understands.
I have tried tweaking with the settings. I've used VBR 1 Pass, 2 Pass, CBR, Progressive Scan, Upper and Lower fields first, all of that.
Has anyone else had this problem, and if so how was it solved?
IF not, can anyone give me a good solution as to how I can get good video quality + low file size. The benchmark is a 45second video takes a maximum of 5MB, Quicktime video. Any suggestions or any methods you find better? Any ideas on how the guys at Apple Trailers manage to do the job so well?
All the help is appreciated. Thanks, guys!

Hi Jeff, I've experimented with a bunch of formats to find the root of the problem, but for this conversation I'll use a Quicktime (.mov) example.
Source Footage Settings :
Video : 640x268, Millions of colors. FPS : 23.98 Data Rate : 1.15mbits/sec
Audio : AAC, Stereo (L R), 44.100 kHz
Sequence Settings :
Video : Quicktime Movie, Pixel Depth : 640, Frame Rate : 23.976
Audio : Source Audio Format : 44100 Hz - 16bit Stereo. Project Audio Format : 44100 Hz - 32bit floating point - Stereo
Average Data Rate : 141KB / second
Pixel Aspect Ratio : 1.0 (Square Pixels)
Export Settings :
Main Concept H.264 Video, Custom Preset.
Video : Frame width & height is same as source. Frame Rate : 23.976. Field Order : None (Progressive) Pixel Aspect Ratio : Square Pixels
           Profile : High. Level : 3.0. Encoding : VBR, 1 Pass. Target Bitrate [Mbps] : 1.3. Maximum Bitrate [Mbps] : 1.5
Audio : AAC, Stereo, 44.1 kHz. Audio Quality : High. Bitrate [kbps] : 192. Precedence : Bitrate
Multiplexer : MP4. Stream Compatibility : Standard
NOTE : I have done the same with .avi files as well with the same audio lag issues. As for the file above, it's a trailer off Apple Trailers which also uses the H.264 encoding. To prove that there is a lag, I imported the 'rendered' file back into Premiere, placed it on a seperate layer on top of the original footage in the timeline and pressed play. As expected, there was a difference in audio playback and video was about a frame late.
Any ideas? Thanks!

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         ProductVersion    = 6.6.7600.16385
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         CompanyName       = CineForm Inc.
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         LegalCopyright    = Copyright © 2001-2008 CineForm Inc.
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         ProductVersion    = 5, 4, 6, 131
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         CompanyName       = CineForm Inc.
         FileDescription   = CineForm DirectShow Decoder
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         LegalCopyright    = Copyright © 2001-2008 CineForm Inc.
         OriginalFileName  = CFDecode2.ax
         ProductName       = Aspect HD
         ProductVersion    = 5, 4, 6, 131
      CineForm HD Encoder
         FileVersion      = 4, 3, 4, 298
         CompanyName       = CineForm Inc.
         FileDescription   = CineForm DirectShow Encoder
         InternalName      = CFEncode
         LegalCopyright    = Copyright © 2001-2008 CineForm Inc.
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         ProductName       = Aspect HD
         ProductVersion    = 5, 4, 6, 131
      CineForm HD Encoder-2
         FileVersion       = 4, 3, 4, 298
         CompanyName       = CineForm Inc.
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         InternalName      = CFEncoder2.ax
         LegalCopyright    = Copyright © 2001-2008 CineForm Inc.
         OriginalFileName  = CFEncoder2.ax
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         CompanyName       = CineForm Inc
         FileDescription   = V210 Decoder
         InternalName      = V210Decoder
         LegalCopyright    = Copyright © 2004 CineForm Inc
         OriginalFileName  = V210Decoder.ax
         ProductName       = Prospect HD
         ProductVersion    = 1, 0, 0, 18
      CineForm YUV16 Converter
         FileVersion       = 1, 0, 2, 4
         CompanyName       = CineForm Inc.
         FileDescription   = YUV16Converter
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      Cinepak Codec by Radius
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         CompanyName       = Radius Inc.
         FileDescription   = Cinepak® Codec
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         LegalCopyright    = Copyright © 1992-1995 Radius Inc., All Rights Reserved
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         ProductVersion    = 1.10.0.0
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         CompanyName       = Blackmagic Design
         FileDescription   = DeckLink DirectShow DLL
         InternalName      = DeckLink DirectShow Filter DLL
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         OriginalFileName  = Decklink.dll
         ProductName       = DeckLink
         ProductVersion    = 7.4
      Decklink MJPEG Decompressor
         FileVersion       = 7, 4, 0, 0
         CompanyName       = Blackmagic Design
         FileDescription   = DeckLink DirectShow DLL
         InternalName      = DeckLink DirectShow Filter DLL
         LegalCopyright    = Copyright © 2003-2009 Blackmagic Design. All rights reserved.
         OriginalFileName  = Decklink.dll
         ProductName       = DeckLink
         ProductVersion    = 7.4
      Decklink Video Capture
         FileVersion       = 7, 4, 0, 0
         CompanyName       = Blackmagic Design
         FileDescription   = DeckLink DirectShow DLL
         InternalName      = DeckLink DirectShow Filter DLL
         LegalCopyright    = Copyright © 2003-2009 Blackmagic Design. All rights reserved.
         OriginalFileName  = Decklink.dll
         ProductName       = DeckLink
         ProductVersion    = 7.4
      Decrypt/Tag
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
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         InternalName      = EncDec.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = EncDec.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      DV Splitter
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = Qdv.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Qdv.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      DV Video Decoder
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = Qdv.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Qdv.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      DV Video Encoder
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = Qdv.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Qdv.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      Intel IYUV codec
         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = Intel Indeo(R) Video YUV Codec
         InternalName      = iyuv_32.dll
         LegalCopyright    = Copyright Intel Corporation 1992-1997
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         ProductName       = Microsoft® Windows® Operating System
         ProductVersion   = 6.1.7600.16385
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         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
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         InternalName      = iyuv_32.dll
         LegalCopyright    = Copyright Intel Corporation 1992-1997
         OriginalFileName  = iyuv_32.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      Microsoft RLE
         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = Microsoft RLE Compressor
         InternalName      = msrle32.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = msrle32.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
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         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = Microsoft Video 1 Compressor
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = msvidc32.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      MJPEG Compressor
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = Quartz.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Quartz.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
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         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = Quartz.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Quartz.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      MPEG Video Decoder
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
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         CompanyName       = Microsoft Corporation
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
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         ProductName       = Microsoft® Windows® Operating System
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         OriginalFileName  = wmvdecod.dll
         ProductName       = Microsoft® Windows® Operating System
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      WMVideo Decoder DMO
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         CompanyName       = Microsoft Corporation
         FileDescription   = Windows Media Video Decoder
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         OriginalFileName  = wmvdecod.dll
         ProductName       = Microsoft® Windows® Operating System
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         CompanyName       = Microsoft Corporation
         FileDescription   = Windows Media Video Encoder
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = wmvxencd.dll
         ProductName       = Microsoft® Windows® Operating System
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         CompanyName       = Microsoft Corporation
         FileDescription   = Windows Media Video Encoder
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = wmvxencd.dll
         ProductName       = Microsoft® Windows® Operating System
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         CompanyName       = Microsoft Corporation
         FileDescription   = Windows Media Video 9 Encoder
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = wmvencod.dll
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      WMVideo9 Encoder DMO
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         CompanyName       = Microsoft Corporation
         FileDescription   = Windows Media Video 9 Encoder
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = wmvencod.dll
         ProductName       = Microsoft® Windows® Operating System
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    Audio Codecs
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         CompanyName       = Microsoft Corporation
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         OriginalFileName  = QCap.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
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         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = Quartz.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      Auxiliary (Creative SB X-Fi)
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = QCap.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = QCap.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
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         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
         FileDescription   = Microsoft CCITT G.711 (A-Law and u-Law) CODEC for MSACM
         InternalName      = Microsoft CCITT G.711 (A-Law and u-Law) CODEC for MSACM
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         OriginalFileName  = msg711.acm.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      CCITT u-Law
         FileVersion       = 6.1.7600.16385 (win7_rtm.090713-1255)
         CompanyName       = Microsoft Corporation
        FileDescription   = Microsoft CCITT G.711 (A-Law and u-Law) CODEC for MSACM
         InternalName      = Microsoft CCITT G.711 (A-Law and u-Law) CODEC for MSACM
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         OriginalFileName  = msg711.acm.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
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         CompanyName       = Blackmagic Design
         FileDescription   = DeckLink DirectShow DLL
         InternalName      = DeckLink DirectShow Filter DLL
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         OriginalFileName  = Decklink.dll
         ProductName       = DeckLink
         ProductVersion    = 7.4
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         CompanyName       = Microsoft Corporation
         FileDescription   =  XDSCodec & Encypter/Decrypter Tagger Filters.
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         OriginalFileName  = EncDec.dll.mui
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         ProductVersion    = 6.6.7600.16385
      Digital-In (Creative SB X-Fi)
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         CompanyName       = Microsoft Corporation
         FileDescription   = DirectShow Runtime.
         InternalName      = QCap.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = QCap.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
      GSM 6.10
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         CompanyName       = Microsoft Corporation
         FileDescription   = Microsoft GSM 6.10 Audio CODEC for MSACM
         InternalName      = Microsoft GSM 6.10 Audio CODEC for MSACM
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         OriginalFileName  = msgsm32.acm.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      IMA ADPCM
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         CompanyName       = Microsoft Corporation
         FileDescription   = IMA ADPCM CODEC for MSACM
         InternalName      = IMA ADPCM CODEC for MSACM
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         OriginalFileName  = imaadp32.acm.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.1.7600.16385
      Line-In (Creative SB X-Fi)
         FileVersion       = 6.6.7600.16385 (win7_rtm.090713-1255)
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         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = QCap.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
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         InternalName      = QCap.dll
         LegalCopyright    = © Microsoft Corporation. All rights reserved.
         OriginalFileName  = QCap.dll.mui
         ProductName       = Microsoft® Windows® Operating System
         ProductVersion    = 6.6.7600.16385
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         FileDescription   = Microsoft ADPCM CODEC for MSACM
         InternalName      = Microsoft ADPCM CODEC for MSACM
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         OriginalFileName  = msadp32.acm.mui
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         OriginalFileName  = mp3dmod.dll
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         ProductVersion    = 6.6.7600.16385
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         OriginalFileName  = CPFilters.dll.mui
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         ProductVersion    = 6.6.7600.16385
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         InternalName      = IMA ADPCM CODEC for MSACM
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         ProductVersion    = 6.1.7600.16385
      WM Speech Encoder DMO
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  • Audio out of sync after importing .MOV

    Experiencing audio out-of-sync issues after importing a .mov clip into Premiere Pro.
    The .mov clip causing the problem does not have a problem when played with quicktime or vlc: The audio matches the video perfectly.
    Adobe Premiere Pro CC 7.2.1 (4) on OSX 10.9.1
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    Details about the .mov clip, via Media Inspector app:
    ============================================================
    General
    Complete name                    : /Users/jukeboxhero/20140203.mov
    Format                           : MPEG-4
    Format profile                   : QuickTime
    Codec ID                         : qt 
    File size                        : 638 MiB
    Duration                         : 34mn 46s
    Overall bit rate                 : 2 566 Kbps
    Encoded date                     : UTC 2014-02-04 06:52:45
    Tagged date                      : UTC 2014-02-06 15:55:40
    Writing library                  : Apple QuickTime
    Video
    ID                               : 2
    Format                           : AVC
    Format/Info                      : Advanced Video Codec
    Format profile                   : [email protected]
    Format settings, CABAC           : No
    Format settings, ReFrames        : 2 frames
    Format settings, GOP             : M=2, N=30
    Codec ID                         : avc1
    Codec ID/Info                    : Advanced Video Coding
    Duration                         : 34mn 46s
    Bit rate mode                    : Variable
    Bit rate                         : 2 449 Kbps
    Width                            : 1 920 pixels
    Height                           : 1 080 pixels
    Display aspect ratio             : 16:9
    Frame rate mode                  : Variable
    Frame rate                       : 18.969 fps
    Minimum frame rate               : 6.522 fps
    Maximum frame rate               : 19.355 fps
    Color space                      : YUV
    Chroma subsampling               : 4:2:0
    Bit depth                        : 8 bits
    Scan type                        : Progressive
    Bits/(Pixel*Frame)               : 0.062
    Stream size                      : 609 MiB (95%)
    Language                         : English
    Encoded date                     : UTC 2014-02-04 06:52:46
    Tagged date                      : UTC 2014-02-04 15:27:35
    Color primaries                  : BT.709-5, BT.1361, IEC 61966-2-4, SMPTE RP177
    Transfer characteristics         : BT.709-5, BT.1361
    Matrix coefficients              : BT.709-5, BT.1361, IEC 61966-2-4 709, SMPTE RP177
    Audio
    ID                               : 1
    Format                           : AAC
    Format/Info                      : Advanced Audio Codec
    Format profile                   : LC
    Codec ID                         : 40
    Duration                         : 34mn 45s
    Bit rate mode                    : Constant
    Bit rate                         : 104 Kbps
    Nominal bit rate                 : 128 Kbps
    Channel(s)                       : 2 channels
    Channel positions                : Front: L R
    Sampling rate                    : 44.1 KHz
    Compression mode                 : Lossy
    Stream size                      : 25.9 MiB (4%)
    Language                         : English
    Encoded date                     : UTC 2014-02-04 06:52:45
    Tagged date                      : UTC 2014-02-04 15:27:35
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  • Premiere Elements 12 MP4 Audio out of Sync

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