H264 problems and out of synch/choppy

I can code/compress the same timeline in Divx, MP4, and just about any other fromat and have no problems at all.
When I go to code and compress in H264, the video and audio are out of sych, and the picture is choppy. I tried different FPS, key frame rates, bit rates and no go, interlace, progressive and it just doesn't matter
But.....When I reduce the picture size to a very small size upon coding/compression, it is in synch, the h264. Like below 360x240
What is going on? Thank you for your time
David

Have you run Apple hardware test and memory (Memtest) test to make sure that your RAM is not defective? http://discussions.apple.com/thread.jspa?threadID=1674664&tstart=0
I would also copy a short video that is causing you problems and try to run it on a different machine just to see where the problem is.

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