Hang on startup due to Ultrabay disk check

I've had trouble ejecting the superbay hard drive.  It's less useful if it's not hot-swappable, but I can live with powering off and switching between it and the dvd.  A program installer I have on the hd stopped working, so I figured I'd do a disk check, which Vista scheduled to do on startup.
Now, when the ultrabay hd is in and the T400 starts up, I get the lovely blank black screen.  Since the hard drive is active most of the time, I let it go for an hour or so, at which point the hd activity stops and the only indicator lights on are wi-fi, the 'Z' in a circle and the plug power icon.
If the ultrabay drive is not in during startup, Vista boots normally, so I'm guessing it has to do with the scheduled disk check.  If so, how can I turn it off?  If it's not the disk check, what could it be?  And what's a good alternate program for checking disks & defragmenting?
Thanks!
T400 | Vista 'meh' 64| T9300 | 4gb | 7200rpm hd x2

Click the "start" button, type msconfig and press "enter". Click the "Startup" tab and find the entry that has "chkdsk" in it, uncheck it. Restart your Thinkpad. After restarting you will receive a message in the lower right corner aout some startup programs being blocked. You will need to click the icon that has the ballon with that message and have it show you the blocked program, one of them will be msconfig, allow it to run. When msconfig runs check the box that says "Do not notify me" and click next.
Vista makes it difficult.
T60 2623-D7U, 3 GB Ram. Dual boot XP and Linux Mint.
T400 2765-T7U Windows 7
Registered Linux User #160145
FYI: I am not employed by Lenovo

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