Hard drive partitions not visible

I have a MacbookPro, with 3 partitions on the hard drive:
* boot disk+OS X (33GB, os x journalled)
* data partition (107GB, os x extended, case sensitive)
* spare (5.5gb, "Unix File System" which I believe is OSX's word for ext3)
Quite often, when I boot up, only the first partition is visible. Disk Utility shows the drive as having one 30GB partition, and the rest as unused space. This is particularly troubling for me, as my home directory is on the second partition, and when it is not found, I cannot log in.
What could possibly be causing the partitions not to be seen?
When this happens, all I can do is continually reboot, hard and soft, until magically one time it works. Sometimes, it also fixes itself after 5-10 minutes.
Any thoughts or ideas?
Thanks,
dave

bump
No ideas anyone?

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    If a sad iPod icon or an exclamation point and folder icon appears on your iPod’s screen, or with sounds of clicking or HD whirring, it is usually the sign of a hard drive problem and you have the power to do something about it now. Your silver bullet of resolving your iPod issue – is to restore your iPod to factory settings.
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    You don’t want to pay any service charges
    You are prepared to buy a new one
    You can’t accept the re-sell value of your broken iPod
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    http://discussions.apple.com/thread.jspa?messageID=2831962#2831962
    What should I do with my iPod? Send it or keep it?
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