Hard drive will not mount after optical drive upgrade

I recently performed an optical drive install. Had to remove the hard drive bays (I use three hard drives - Luckily, 2 run OSX).
I carefully removed all three drive bays and the empty bay. When I inserted the drives into the computer I had changed the position, swapping one OSX drive with a different one and reversing the drive bays. On restart, the computer started on the drive I had not selected for startup and I received an error message stating the other drive could not mount and it gave three options (Initialize - Ignore and Eject).
I can see the drive in Disk Utility and repair the permissions (it's also located in the System Profile).
I tried a few things I read in the community using various Terminal commands but was unsuccessful.
(Let me point out that I recently switched from a PPC G5 to MacPro and swapped the drives from PPC into MacPro and all has been fine until I removed changed their positions in the bays)
Any suggestions/help would be greatly appreciated.

I would recommend you reformat your drives that you brought over, and if possible put in a Firewie case.
Swapping drives will normally not matter but you should use Startup Disk to reset the default after using Option key the first time.
Putting in an optical device shouldn't require removing the drives to get the cage loose and let you put in a 2nd superdirve.
G5 used APM partition map, Intel Macs use EFI and requie GPT/GUID.
A drive with just data should not matter but that is not fool-proof either.
A drive iwth the system from a G5 though can.
During startup the boot process scans all volumes and looks for systems and mountable volumes.
Pull all the drives except the one with OS X that you were using, and put that in bay #1.
I've moved arrays between bays and that never "broke" the array or had trouble mounting and using (even moving to ODD ports).

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