Hardware Interrupts HELP please

Hello,
My problem is this: when i open my PC everything works perfect, but when i execute a "heavy" programme(like games or a full system scan etc) after a while the CPU reaches 100% and the system is responding really slow(30-45 sec after the mouse click).I have downloaded the processexplorer and clearly the problem is the Hardware Interrupts.
I had the same problem 6 months ago, i formated the HD and everything was normal again.Yesterday the Hardware Interrupts started again.I couldn`t find anything to do(i`ve searched a couple of forums) so i decided to format the disk again hopping that everything was going to fix again(at least for some months) but unfortunately today and after trying to play Command and Conquer Tiberium Wars the system crashed and (based to processexplorer) the hardware interrupts was the problem again.
Somebody help please and thanks for your time

First of all thank you very much for your very quick response.
I also thought that maybe the Video Card or the CPU temperature is increasing and causes the hardware interrupts but the CPU temperature doesn`t go higher than 37-38 degrees Celsius and the SYS temp is 1 or 2 degrees lower. For example right now i am copying some files from a DVD and the Hardware interrupts are using avg. 30% of the CPU and the CPU temp is avg. 32 degrees Celsius and the SYS temp is avg 29 degrees Celsius. The temperatures are taken from the Core Center programme from MSI.If there is any other way to see my CPU`s and system`s temperature please tell me to check it.
As for the Hard Disks I am checking now one of them and there may be a problem.I will do some tests and i will inform you as soon as i can.
Thank you very much

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