HELP! CANON 5D MARK III TO FCP 7- WHAT IS CORRECT COMPRESSION? LINES THROUGH VIDEO-HELP!

Hi there, so Ive just upgraded from the T2i to Canon 5D Mark III and this is the first time I'm importing footage to final cut. I have FCP 7 (Mac computer) and my video files are 1920x1080, h264 codec shot at 30 fps (29.97). Previously, when importing from the T2i, I used MPEG Streamclip to convert my video files to Apple Prores 422, and then import those compressed files into FCP 7, with field dominance being UPPER, pixels SQUARE. I never had an issue of quality loss or lines through my viewer and canvas using these settings. However, after attempting to do the same with my footage from the Mark III, I got lines through my footage. After researching a bit, I was convinced that the way to eliminate the problem was to download the 5DTORGB app for $50. This has not fixed my problem! Have tried multiple combinations of different field dominance settings and nothing is working. Is this an interlacing problem? I attempted to catch a screenshot but everytime I pause the video or take a shot, the lines do not show...I do not know what is going on! My original mov files are fine, it is only once I convert and import to final cut that they get these little lines... I am desperate for answers, please someone help!!!

Still no change....However, I did export a trial and the vid looks fine, no lines. I guess fcp is just being a little *****! It is just really frustrating me to have to work with these lines going through my clips, even if they do not appear in my exported file....I feel that there must be some hidden issue with my sequence settings....Could you possibly provide a screenshot of the appropriate sequence settings you would use to match a 1920x1080 file with 29.97 fps (already converted from h264 to apple prores 422 thru 5DTORGB) ? I know that usually it is fine to import the newly compressed prores files, and then set sequence to match clips, but since I'm having issues, maybe setting the sequence directly would help?
This is what my sequence settings look like right now, after being matched to my prores clip....
I am concerned because it shows Aspect ratio as HDTV 1080i (16:9) though you have told me my clips from the 5D should be progressive (so shouldnt it be 1080p not 1080i??) Being that there is not option in frame size for 1080p, i tried selecting the "Custom (16:9)" option, but it will not allow it...Just sets it back to 1080i......Any thoughts?

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