Help! Flag button is suddenly missing from corner of image in Aperture 3.

Aperture 3 restarted itself while I was editing and now the option to flag an image is no longer available, and there are no visible flags on images I flagged prior to this happening, although they still come up as flagged images when I choose to only view those images. Help!

In order to see the Flags and be able to apply them you must have them set to appear in your current Metadata Overlay. It sounds as though you have changed to a different Overlay than the one you were using.
There are seven Metadata Overlays** -- each fully customizable. Well worth taking the time to set up and learn how to change. Full instructions are in the User Manual. Click the icon on the Toolstrip Alastair has illustrated and select "Edit ... ".
(** "Basic" and "Expanded" views for each of "Browser", "Viewer" and "List", plus "Tooltip" view.)

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Help! Flag button is suddenly missing from corner of image in Aperture 3.

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