HELP! Moved website from one mac to another but lost some files...

I recently purchase an iMac (my wife already owns a MacBook)... I had created a website using iWeb and transferred the DOMAIN files to my new computer... I worked on the website for several hours last night, published it to a folder and everything looks fine.. HOWEVER< this morning I tried to open iWeb and some problems are occuring...
iWeb opens and starts to pull up my website to work on but ALL of the necessary files are reportedly missing... the interesting thing is that all of the files are actually on the desktop in the Site folder.. hmmm... I copied the domain file to Aplpication Support/iWeb/ - was this not correct?
I am hoping that this is an easy fix.. maybe I just need to have the domain file in the same folder as the files it is looking for...
any thoughts?
thanks in advance for your help...

You can keep the domain file anywhere you like as long as it is in its own folder.
If its not in the default location -Home Folder/Library/Application Support/iWeb- all you do is double click the domain file to launch it in iWeb.
Try quitting iWeb, delete the preference file - Home Folder/Library/Preferences/com.apple.iWeb.plist, restart your Mac and run Disk Utility to repair permissions.

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