Help or tips on config new Mac Pro hard drives

Been saving for over a year and just bought a new Mac pro. The day after MacWorld with no upgrade announced ☹.
My configuration is the 2x 2.8Gh quad-core processors, 2 GB of RAM, ATI Graphic card (standard), and a 1TB hard drive in the first hard drive bay.
I am upgrading for the original 1 processor G5 (sounds so slow now). I am planning on taking my 1TB hard drive from that machine which contains my entire iTunes library, and its full! Mostly of legally ripped DVDs and TV shows.
I am planning on configuring my hard drives like so.
Drive Bay 1: 1TB drive, I am considering partition it so there are about 400 gigs on a boot drive for applications and libraries and using the other 400 or so gigs left over as a drop box for things from my over full iTunes hard drive. (TV shows which have ended, so the tags won’t be changed)
Drive Bay 2: 1TB, or 500 gigs depending on the price I get for a hard drive. If it’s a 1TB I will just have it mirror the drive in bay 1. If its 500 gigs, I will have the iTunes “drop box” mirrored in drive 2 and use my time capsule to back up the OS, applications and libraries.
Drive 3 will be my currently full TB hard drive from my current machine and drive 4 will be a TB drive as an exact mirror for back up purposes.
Can I set up these mirrors I want with time machine? Also I have never partitioned a drive, I know you can do it in disk utility, is it a pretty self-explanatory process?
Is this set up of drives a good idea? A RAID seems too costly and just too much since I am not worried about response times of the drives, as long as my media plays properly I am generally happy. I do some work in PS and FCE but not enough to warrant percent scratch disks and RAIDed drives. I also read about a back up program called SuperDuper but it seems like time machine can do anything I would need super duper to do so is it worth the 30 bucks.
Also I have never used migration assistant, is that fairly painless or am I better off just syncing what I can with Mobile Me, and brining the rest of the things I need over VIA external hard drive? (Documents and pictures and such)
I haven’t gotten a new Mac in 5 years so are there any other tips you recommend when setting up my OS? I read somewhere to create an Admin profile that you never use for log in, and than your own profile? Just simple things like that. I have been browsing my old Macworld magazines looking for small tips!
Well thank you for reading my long post! I am super excited about this Mac to ship in 2-4 days I even shelled out for next day shipping so I didn’t have to want any longer than I needed to.
Thanks in advance.

I've had my MP just a few months, and like you I've filled the drive bays in no time.
I keep on top of things using two pieces of software;
CarbonCopyCloner - this runs two nightly 'incremental' bootable Clones of my OSX/iTunes/iPhoto 'System' HD, one to an internal drive, one to an external FW800 D2.
ChronoSync - This I use for everything else, work in progress & archives etc - During and towards the end of my jobs (I'm a photographer), I will use ChronoSync to perform perfectly synced Backups to external FW800 D2s and will soon be purchasing a NewerTech Voyager Q to facilitate the use of bare HDs for rotational backups.
Time Machine isn't a program I've looked into and frankly the way I work doesn't really require that 'Archive' backup style.

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