Help please with recapture/reconnect of media files

Hi, My Lacie ext. f/w drive has just died during a backup session. I have a sequence cut on the timeline, my project files and the original tapes so I should be able to re-capture and re-connect to my back up drive (also a Lacie unfortunately, I'll never buy another one)
Problem is ... using batch capture (by ctrl clicking on each browser icon with a red line through it) my DV deck finds and captures the media OK from the tape but when I re-connect to the media on its new drive it still shows up in the timeline as being offline even though I can drag it to the viewer, so it is there. What's going on?
I've been editing using a multiclip made (obviously) from subclips. Should I re-capture the original raw rushes or the subclips or doesn't it matter. I've already tried both. No joy.
A second problem I'm going to have later if I ge through this, is re-capturing material very close to a camera start, my DSR 11 deck won't find the start point because of the broken timecode, presumably I could 'Capture Now', across the tc break then trim the in and out to the original numbers, create a subclip and tell FCP that I want to 'reconnect, as it were, to a new clip.
Thanks in anticipation of a brilliant insight to hopefully something that's completely obvious and easy to fix!

Unbelievable .... after several hours of re-capturing to 2nd drive, my 1st drive sprung into life AND my 2nd drive failed in the same way, (repetitive clicking and not seen on the desktop.) WHAT'S HAPPENING TO ME!!!!!?????? I've swapped drives, cables, f/w ports and both discs behave badly when disconnected from my MBP so can't imagine both problems having same cause. Utterly baffled except that it happened after a long hard edit session with drives powered up for 24 hours or so.
Anyway thanks for the suggestion I'll do some experiments for next time, shouldn't be long with Lacie drives. What you're suggesting then is that even though the media IS offline I need to TELL FCP its gone. What's the difference between deleting a clip from the browser and telling FCP to make it off-line. When I had the problem I already had a red stripe so I don't know whether the make offline thing would already be greyed out.

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