Help with system upgrade for CS6

Hello. I am hoping you can give me some advice on what to do (or buy) to improve my video editing system.  I am a bit of novice when it comes to the technical/hardware end of things and I’m having some issues with my current system. 
I working in Adobe CS6 Master Suite on a Windows 7 Ultimate PC.  I mainly use Premiere Pro, After Effects, Photoshop, and Audition.  I create very complete animations and videos with many layers and effects (via Boris & Red Giant).  I also use Skype to record group video calls (with the program Evaer) for a reality T.V. recap show which I also edit with my Adobe suite.  However I have two main problems.
When I render out a 20 minute premier pro project (with several HD video layers and effects) it takes almost 13 hours.  It seems like this is very long considering my high end components, and set up.  For example I run ONLY my OS off an SSD.  My programs are on another SSD.  The files I use for the video are on another HDD, and I render to another HDD.  I was told by keeping all the aspects on separate hard drives it would speed everything up.  Is that true?  I also am now reading that rendering to a SSD would speed things up.  Should I consider changing my workflow/hard drive set up that way? 
My other problem is that when I record my Skype group calls of 4 people (with Evaer) to my SSD the audio is always off when I bring it into Premiere.  I don’t know if this is a problem with Evaer, a codec (it records it as H.264/MPEG-4 AVC Codec.  At 1280 X 720 and 30fps), that SSDs auto compress files, or that my system just cant handle it.  Plus Soundblaster & Nvida both seem to active as audio features on my system I don’t know if that effects anything.  Is there any advice any of you have on this issue as well?  Perhaps another program to record skype or group calls?
Finally… all that aside.  Considering the work I am doing should I just upgrade my system to a better Mobo and graphics card.  I see a lot of people are recommending a dual processor work station.  If so what is a good motherboard, and processor(s) I should get if I build my own workstation?  I have about $4000.00 I could invest in building one if you think would greatly improve my work flow and render times.  I also have a quadro k5000 on the way, and id like to be able to use the memory I have already.
I realize I am asking a lot of questions.  I would truly appreciate any help, advice or just a point in the right direction.  I have included my current system specs below incase that helps with any of my questions.  If you have any other questions or need more information just let me know.  Thank you again in advance for any help you can provide.
-Eric
MOTHERBOARD:
Gigabyte G1.Assassin  http://www.gigabyte.com/products/product-page.aspx?pid=3752#ov
PROCESSOR:
Intel Core i7 X 980
5 HARD DRIVES:
(1) SATA II WD (WD15EADS-00P8B0) 3gb Hard Drive @ 1.5TB
(2) OCZ SATA AGILITY II SSD drives @120GB: http://www.newegg.com/Product/Product.aspx?Item=N82E16820227543
(2) Hitachi 6gb SATA III drives @2TB: http://www.newegg.com/Product/Product.aspx?Item=N82E16822145473
3 DVD/CD/BLUERAY DRIVES:
(1) SATA DVD DRIVE
(1) SATA BlueRay Drive
RAM:
24GIGs of this ram: http://www.newegg.com/Product/Product.aspx?Item=N82E16820145321
GRAPHICS:
(1) NVIDIA GeForce GTX 680  http://www.geforce.com/hardware/desktop-gpus/geforce-gtx-680
SOUND CARD:
NONE DEDICATED: But Onboard Creative Soundblaster X-Fi Digital Audio Processor (20K2) with X-Fi Xtreme Fidelity™ and EAX® AHD 5.0™ Technologies built into MoBo.
PLUS: NVIDIA High Definition Audio
CONTROLLERS:
Microsoft ISATAP Adapter
Intel(R) ICH10R SATA AHCI Controller
Realtek PCI GBE Family Controller
Marvell 91xx SATA 6G Controller
Renesas Electronics USB 3.0 Host Controller
MY HARD DRIVE SETUP:
*I also have a network server which I use to back up files, and access files across my other systems. 

Eric,
I would hardly call the Quadro card an upgrade to a GTX 680!
Regarding getting more speed from a faster MB / CPU, since you already have a 6-core rig with 24GB of RAM I would think that any gains you would get would not be that dramatic.
Check out your cpu usage (Task manager) and see how busy your cores are during a test render. I am guessing that the Boris and / or Red Giant effects could be jumping your projects from gaining the full multi-core capabilities of the Adobe software.
Regards,
Jim

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