Help with Warning Message in FCE

I use MPEG Streamclip to convert MPEG files to Quicktime .mov files. When I import those files into FCE, I receive a warning message (for some files, but not all) that says:
The following media files are not optimized for FCE. It is highly recommended that you recapture the media to create new copies of the files to improve their performance for multi-stream playback.
Any idea what might be causing this to happen for some but not all files?

It appears that the mods have moved your post to the correct forum.
Here's a tutorial on using MPEG Streamclip: http://www.secondchairvideo.com/?p=739
Note that it is important that you use settings in MPEG Streamclip that will exactly match your FCE Sequence. For example, if you have a DV/DVCPro Sequence with 48khz audio at 29.97fps in FCE, then in MPEG Streamclip, you choose the DV/DVCPro NTSC compressor, set the quality to 100% and the audio to 48khz BEFORE you export.
-DH

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