Help! zapping PRAM has lost my drive!

I was working my way through various trouble-shooting routines and read something here which led me to try zapping the PRAM (control-optionP+R on restart) which gave me the expected two chimes but left me with a blinking disk icon with a question mark on it. I remember this from OS9 days as a 'no startup disk found' alert. Neither a normal 'hard' restart or power-down/power-up has fixed it. What's going on?
I should mention this is a Quicksilver G4 running 10.3.6 and the issue I was trying to fix was the occasional defaulting to VGA screen resolution on start-up. The flashing '?' icon is appearing in VGA resolution too. Can anyone help?

Ok, following a long search of various mac fora, in which I realised that the problem is a missing system folder rather than startup disk, I discovered that booting while holding the option key down lets you choose between available system folders.. and it did! HUGE sigh of relief!
I still have the original problem(s) though.. could all this weird behaviour - VGA startup screen / blinking '?' after zapping PRAM / some (unresolved) issues with the firewire bus - point to a problem with the PRAM battery?
Thanks in advance of any reply.

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