How can I clean virus infected files on my Time Machine disk?

I am running McAfee VirusScan and it locates and cleans virus infected files just fine on my computer, but when it finds infected files on my Time Machine backup drive it says "Repair Failed". Is there a way to clean infected files on my Time Machine backup drive?
Related question: Is this because the actual files are saved in a central hidden location and the files I see when I open the backup disk with finder are actually just alias links?

Schmactor,
First, it is unlikely that your software is actually finding a virus of any kind. Many supposed reports of a virus will, in fact, be perfectly legitimate (and harmless) files. While it is possible that you'll receive a virus, it is still unlikely. Most ISPs run anti-virus software on their email servers; if a virus is sent to you in an email, it is usually removed before you download it.
Even if you have downloaded an email, it is even less likely that you're going to send it to a Windows-using friend. Since any Windows virus is going to do absolutely nothing on your Mac, you most likely will just delete it. Are you in the habit of forwarding random emails that have unidentifiable attachments to your friends?
Keep in mind that it is always in the best interest of the developers of anti-virus software titles that the software constantly "finds" things, even when nothing exists. If you were to purchase anti-virus software, only to find that it does absolutely nothing for months at a time, you will not pay for further updates. I have been using a Mac for many, many years, and I have never run any kind of anti-virus software. I have also never sent a virus to someone else.
Scott

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