How can I prevent Firefox from opening a second instance of Excel when I click on a web link to a .csv file?

I can't find anything about this online

The CSV files are send as Content-Type: text/comma-separated-values
Do you mean that you also see the file in a Firefox tab or do you get two Excel instances?
You can try to rename (or delete) the mimeTypes.rdf file in the Firefox profile folder to reset all file actions.
*http://kb.mozillazine.org/mimeTypes.rdf
*http://kb.mozillazine.org/File_types_and_download_actions#Resetting_download_actions
You can use this button to go to the currently used Firefox profile folder:
*Help > Troubleshooting Information > Profile Directory: Show Folder (Linux: Open Directory; Mac: Show in Finder)

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