How do I manage two iPods on one computer please?

I have an iPod (early 40G model, and it's fine). I installed iTunes, and all fine. A year goes by. Another member of the household gets an iPod (mini), and we load the software into a different subdirectory in Program Files. This erases my iTunes, but all still works fine for some reason. i.e. when I attach my iPod, it is recognised, and my iTunes music is shown on the screen. When the other iPod is attached, same thing (i.e. it is recognised and her iTunes are shown on the screen). Our different music folders are stored in different subdirectories.
This is all fine, until her iPod erases itself, and is now no longer recognised by iTunes. In the processes advised for solving this situation (restore and reset etc) we erase my iPod (but have managed to restore music to if after re-installing the original software that came with it.)
So now we are back to the stage of having her iPod not being recognised by iTunes. Please suggest solutions! Please also advise if there is a more sensible way of managing two iPods on one PC. Is it really as basic as having different playlists?
Thanks in advance for your help.

Yep. Playlists will do it.
If you want other options, see this:
Natalie Beresford: Multiple iPods/iTunes Installations

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