How do I match a clip to sequence settings and sequence presets?

I'm getting the warning: Attention - This clip does not match this sequence's settings or any or our sequence presets.
I'm trying to figure out how to set things up in Compressor so that my clips do match my sequence settings and presets. The issue seems to be with the audio not matching.
Here are the sequence settings:
Audio-2 Outputs
Frame Size- 1920x1080
Vid Rate-24fps
Compressor-Apple ProRes 422 (proxy)
Aud Rate 48.0 KHz
Aud Format 32-bit floating Point
I shot all the footage with a Canon 5D Mark II. I'm using Compressor to convert all my original clips. The only thing I don't seem to be able to match is the Audio. I can't find any way in Compressor to encode clips that have "two outputs" in the Audio column.
The dialogue box for "Sound Settings" in Compressor doesn't offer any sort of options, that I can find anyway, to generate clips with "two outputs."

These are the Compressor settings:
Description: Apple ProRes 422 10-bit video with audio pass-through. Settings based off the source resolution and frame-rate.
File Extension: mov
Estimated size: 16.36 GB/hour of source
Audio Encoder
Apple Lossless, Stereo (L R), 48.000 kHz
Video Encoder
Format: QT
Width: (100% of source)
Height: (100% of source)
Selected: 1920 x 1080
Pixel aspect ratio: Square
Crop: None
Padding: None
Frame rate: (100% of source)
Selected: 24
Frame Controls: Automatically selected: Off
Codec Type: Apple ProRes 422 (Proxy)
Multi-pass: Off, frame reorder: Off
Automatic gamma correction
Progressive
Pixel depth: 24
Spatial quality: 50
Min. Spatial quality: 0
Temporal quality: 0
Min. temporal quality: 0
These are the sequence settings:
Frame Size: 1920 x 1080
Editing Timebase: 24fps
Field Dominance: None
Pixel Aspect Ration: Square
Anamorphic 16:9: Off
Video Processing YUV allowed (8-bit)
Compressor: Apple ProRes 422 (Proxy)
Millions of Colors (24 bit)
No Data Rate Limit
No Keyframes Set
Quality: 100
Audio Settings:
16-bit 48.000 kHz Stereo
I made screen shots, but don't see how to paste them into this post.

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