How do I move my OS files from one drive to another on a Mac Mini server

My main drive on my Mac mini is dying so I need to move all my files, including the OS, to the other drive.  Do I just copy all the files over then delete the old ones and reboot?

The disk that was the "Lower" is the one you cloned to. When you clone, the name of source disk is copied with the contents to the target disk.
The lower HD is the one closest to the bottom of the Mini.
http://www.ifixit.com/Guide/Installing+Mac+Mini+Late+2012+Dual+Hard+Drive+Kit/11 713Thus if you cloned the bad drive, the bad drive is in the lower location.
This says how to replae the lower drive.
Are both drives identicatal drives (except for SN)? If not maybe y could comfirm by that.
Also, how was it failing? The If it SMART errors you can tell in there are any SMART errors idenfied for that disk in Disk Utilty.
Further, if you go to Disk Utility and click on the HD itself, not Server HD, that will say upper or lower in bottom left

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