How do I recover backups from Time Machine after using Migration Assistant?

I had to get my Macbok Pro erased (at Apple store) this week. I used Migration Assistant to pull everything back in via Time Machine from my external hard drive (through Airport Extreme).
Annoyingly then accidentally deleted all work Mail folders. Going back in to Time Machine to Restore, all the historic Mail folders now seem to have disappeared.
Can anyone please advise?

Back up all data to at least two different storage devices, if you haven't already done so. The backups can be made with Time Machine or with a mirroring tool such as Carbon Copy Cloner. Preferably both. You must be certain that you can restore everything to the state it's in now.
Boot into Recovery, launch Disk Utility, and erase the startup volume. This operation will destroy all data on the volume, so you had be better be sure of your backups. Install OS X. If your Mac was upgraded from an older version of OS X, you’ll need the Apple ID and password you used to upgrade, so make a note of those before you begin.
When you reboot, you'll be prompted to go through the initial setup process. That’s when you import the data from one of your backups. For details on how this works, see here:
Setting-up a new Mac from an old one, its backups, or a PC Using Setup Assistant on Lion
Don't import the Guest account, if it was enabled on the old system.
Note: You need an always-on Ethernet or Wi-Fi connection to the Internet to use Recovery. It won’t work with USB or PPPoE modems, or with networks that require any kind of authentication other than a WPA or WPA2 Personal password.

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