How do I recover .emix messages into Mail app?

I wanted to rebuild my mailbox because of some issues I was having with a rule not catching all the files I thought it should. I am using 4 POP accounts all on the same smtp server. I have 10s of thousands of messages so I knew it might take some time. When I selected it, all messages disappeared from all mailboxes, including the folders on my Mac. I was patient for a while, but when over 24 hours had passed with no visible sign that anything was happening. I force quit the app and relaunched. Everything was still empty. Per another discussion, I deleted the old Envelope index files from the MailData folder and relaunched. It seemed to work, taking a couple of hours to reimport, and everything looked fine. But now I find that all the old messages in my Wife's Mail account are empty. However they all still exist in her INBOX.mbox folder, but in a subfolder called Data-T0x600000673740-T75NeQ instead of the Data folder, which holds only the messages since the restart. So I have all these .emix files but how do I reimport them to the program? Remembering that they already appear in the list as if they exist.

As an update. I tried using an emix to mbox converter, but, while it did create an mbox with the ~18k messages, when imported messages had no from, date or subject entries, so finding any old message would be incredibly difficult. All formatting and attachments were gone as well.

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How do I recover .emix messages into Mail app?

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